Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chelonia_20mydas_20[refseq_20GCF_5F000344595.1_202013-03-18] 140,023 sequences; 2,208,410,377 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq10001 116 3e-21 seq78831 100 2e-16 >seq10001 Length=4979691 Score = 116 bits (128), Expect = 3e-21 Identities = 100/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || |||||||| || |||||||||||||| || | ||| |||||||| |||||||| || Sbjct 1096741 TCATCTCTGCTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAACCCTCTCTTCTTC 1096800 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 | |||||| || | ||||| || ||||| ||||| || ||||| || || ||||| ||| Sbjct 1096801 AACCAAAAGATGGATGCAAAGGAGCCAGAGAAGAAGATTCCTTCCACTGCTGCAAAAGCT 1096860 Query 4692 ACTA 4695 |||| Sbjct 1096861 ACTA 1096864 Score = 105 bits (116), Expect = 6e-18 Identities = 88/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 4808 TGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTAT 4867 ||| |||| ||| ||||| ||||| || || || |||||||| |||||||| ||||| || Sbjct 1099776 TGGATCTTTAATGTAAGTATCTATGAGCAGACTGTACATTTCTGAATGTATGTTTTCCAT 1099835 Query 4868 AGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915 ||||||||| || || || || || | |||||||||||| || ||||| Sbjct 1099836 AGCAATCTGGAAGCCATAGAAACAGCGAGCTTCTGTTACCTGTACTTC 1099883 >seq78831 Length=713705 Score = 100 bits (110), Expect = 2e-16 Identities = 94/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 4931 TACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATAT 4990 ||| || ||||| ||||| || || || |||||||||||||| |||| |||||||| || Sbjct 188832 TACCAAATTTTCATTTACAATTCCATCGCTGGCTGCAAAAAAAGCCAGGACATGAGAGAT 188773 Query 4991 AAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAAC 5050 ||||| | ||| || | || || || |||||||| || || ||||| | ||||||||| Sbjct 188772 GAAGTATTTTTCTTCTGATTTCAGCTTGTTCCAGTGAGGAAAGTCTTTTGATAAATCAAC 188713 Score = 98.7 bits (108), Expect = 8e-16 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || |||| |||||| || || || || || || | ||| ||||| | ||| ||||| || Sbjct 197040 TCATCTCGGCTAATGAGCTCATTGGAGAATGTCAGTCCAGGCATCAGACCCCTCTTCTTC 196981 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 |||||||||||||| ||||| || || || ||||| || ||||| ||||| ||||| || Sbjct 196980 AGCCAAAATATAGCAGCAAAAGAACCTGAGAAGAAGATCCCTTCCACGGCAGCAAAGGCA 196921 Query 4692 AC 4693 || Sbjct 196920 AC 196919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426320826912659