Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chelonia_20mydas_20[refseq_20GCF_5F000344595.1_202013-03-18] 140,023 sequences; 2,208,410,377 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq10001 104 3e-17 seq94266 98.7 1e-15 seq78831 98.7 1e-15 seq54353 93.3 6e-14 >seq10001 Length=4979691 Score = 104 bits (114), Expect = 3e-17 Identities = 116/153 (76%), Gaps = 4/153 (3%) Strand=Plus/Plus Query 47790 GTTC-TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTC---TTGAGACATAACTCC 47845 |||| |||||||||| |||| | || ||| |||||| || ||||| ||||| Sbjct 1094994 GTTCATTTAAAAGTCTGCATCCAGAGTGAAAGAGTTATCTGTGGGTTTTGACATTACTCC 1095053 Query 47846 CATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATAT 47905 ||| || || ||||| || || || ||||| || || ||||| |||||||||| ||| || Sbjct 1095054 CATCTTCTGGTATTCTCCTACTCGCTTCTCAAAGAAGTTAGTCTTGCCTTCCAGTGAGAT 1095113 Query 47906 ATTTTCCATAAAATCAAATGGATTAACTGCATT 47938 ||| ||||| || ||||||||||| |||| || Sbjct 1095114 ATTCTCCATGAAGTCAAATGGATTCTCTGCTTT 1095146 Score = 91.5 bits (100), Expect = 2e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 48401 ATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGC 48460 |||||||| |||||||||||| | ||||| |||||||| || || || ||||| || || Sbjct 1099779 ATCTTTAATGTAAGTATCTATGAGCAGACTGTACATTTCTGAATGTATGTTTTCCATAGC 1099838 Query 48461 CATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTC 48505 ||||| || || || ||||| | |||||||| | |||||| || Sbjct 1099839 AATCTGGAAGCCATAGAAACAGCGAGCTTCTGTTACCTGTACTTC 1099883 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| || || | |||||||||||| ||||| || ||||||| || | || || Sbjct 1096741 TCATCTCTGCTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAACCCTCTCTTCTTC 1096800 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 | |||||| || | || || || ||||| ||||| || ||||| || || ||||| || Sbjct 1096801 AACCAAAAGATGGATGCAAAGGAGCCAGAGAAGAAGATTCCTTCCACTGCTGCAAAAGC 1096859 >seq94266 Length=584714 Score = 98.7 bits (108), Expect = 1e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||| || ||||| | |||| || ||||| || |||||||| || ||||| | || Sbjct 83283 TGAAACTCGCCAGAGAGAACTCGGCGTGTGTAGATGTTACTGGTGTAGGGTTCAATGGAC 83342 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGG 77230 |||||||| ||||| || ||||||||||||||||||||||| || Sbjct 83343 TCATTGTTGCCCAAGATCTGAGCAGTAGAAGCAGTTGGCATTGG 83386 Score = 93.3 bits (102), Expect = 6e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062 || |||||||| ||||||||||| ||||| || |||| || || |||| || || || Sbjct 89249 ACCCGTTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAGAGGTCTCTGGCTCGCTGC 89308 Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122 || || || || || ||||| || || || |||||||| | ||| || | |||||||| Sbjct 89309 TCCTCCTTCCCGGTGTTCTTCTTCAGGTCAAGAAACTCAAAAATGTCCAAGTGCCATGGC 89368 Query 78123 TCTAGATATATTGC 78136 || ||||| || || Sbjct 89369 TCCAGATAGATGGC 89382 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || || ||||| || | ||| ||||||||||| |||||||| || ||||| || || ||| Sbjct 92465 GTGCCAGCATTGAAGAGTGTGGGAGATGCATGGGTAAACCACTTCTCAGATAGGAGGTTG 92524 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 || |||||||| || | || ||||| || || ||||| || | ||| | ||||| | Sbjct 92525 TAGGTTTCAATCGCAGCATCGATGTCATTTTTGTGGATTCCCACAGATACCCTCATCAGC 92584 Query 78519 ATATGCTGAGGTCTTTCA 78536 || || || || | |||| Sbjct 92585 ATGTGTTGGGGGCGTTCA 92602 >seq78831 Length=713705 Score = 98.7 bits (108), Expect = 1e-15 Identities = 81/99 (82%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 48639 ACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACTG 48698 || ||||| |||||||| || || || | ||| ||||||||||| ||||||||||| | Sbjct 184870 ACCTCTTCTGCTGTCCAGAAGGAAGCTTGTGCCTTTTTATACATGTTCCATATATCCGGG 184811 Query 48699 TATTGGATTGGGAAAATAACAAATCTATTTGGATTTTTT 48737 ||||||| |||||| || ||||||||| ||||||||| Sbjct 184810 TATTGGAGTGGGAAGATGACAAATCTACGAGGATTTTTT 184772 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 ||||||| ||||| | || || || ||||| || || ||||| || || | || || Sbjct 197040 TCATCTCGGCTAATGAGCTCATTGGAGAATGTCAGTCCAGGCATCAGACCCCTCTTCTTC 196981 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 ||||||||||| || || ||||| || || ||||| || ||||| ||||| ||||| || Sbjct 196980 AGCCAAAATATAGCAGCAAAAGAACCTGAGAAGAAGATCCCTTCCACGGCAGCAAAGGC 196922 >seq54353 Length=924 Score = 93.3 bits (102), Expect = 6e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062 || |||||||| ||||||||||| ||||| || |||| || || |||| || || || Sbjct 629 ACCCGTTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAGAGGTCTCTGGCTCGCTGC 688 Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122 || || || || || ||||| || || || |||||||| | ||| || | |||||||| Sbjct 689 TCCTCCTTCCCGGTGTTCTTCTTCAGGTCAAGAAACTCAAAAATGTCCAAGTGCCATGGC 748 Query 78123 TCTAGATATATTGC 78136 || ||||| || || Sbjct 749 TCCAGATAGATGGC 762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 693452929882720