Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chelonia_20mydas_20[refseq_20GCF_5F000344595.1_202013-03-18] 140,023 sequences; 2,208,410,377 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq78831 98.7 1e-15 seq10001 96.9 5e-15 seq94266 89.7 7e-13 seq54353 89.7 7e-13 >seq78831 Length=713705 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 ||||||| ||||| | || || || ||||| || |||||||| || || | ||| || Sbjct 197040 TCATCTCGGCTAATGAGCTCATTGGAGAATGTCAGTCCAGGCATCAGACCCCTCTTCTTC 196981 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 |||||||||||||| || ||||| || || ||||| || ||||| || || || || || Sbjct 196980 AGCCAAAATATAGCAGCAAAAGAACCTGAGAAGAAGATCCCTTCCACGGCAGCAAAGGCA 196921 Query 46774 ACAAGTCTCTCTCC 46787 || | |||||| || Sbjct 196920 ACCACTCTCTCCCC 196907 Score = 93.3 bits (102), Expect = 6e-14 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 47128 ACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACGA 47187 || ||||| ||||||||||| || || | ||| ||||||||||| ||||||||||| | Sbjct 184870 ACCTCTTCTGCTGTCCAGAAGGAAGCTTGTGCCTTTTTATACATGTTCCATATATCCGGG 184811 Query 47188 TATTGGATCGGAAAAATAACAAATCTATTTGGATTTTTT 47226 ||||||| || || || ||||||||| ||||||||| Sbjct 184810 TATTGGAGTGGGAAGATGACAAATCTACGAGGATTTTTT 184772 >seq10001 Length=4979691 Score = 96.9 bits (106), Expect = 5e-15 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949 |||||||| || |||||||| | ||||| |||||||||||||| |||||||| ||||| Sbjct 1099779 ATCTTTAATGTAAGTATCTATGAGCAGACTGTACATTTCTGAATGTATGTTTTCCATAGC 1099838 Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCT 46995 ||||| || || || ||||| | ||||| || | |||||| ||| Sbjct 1099839 AATCTGGAAGCCATAGAAACAGCGAGCTTCTGTTACCTGTACTTCT 1099884 Score = 89.7 bits (98), Expect = 7e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||| || || | |||||||||||| ||||| |||||||||| || | ||| || Sbjct 1096741 TCATCTCTGCTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAACCCTCTCTTCTTC 1096800 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 | |||||| || | || || || ||||| ||||| || ||||| || || || || || Sbjct 1096801 AACCAAAAGATGGATGCAAAGGAGCCAGAGAAGAAGATTCCTTCCACTGCTGCAAAAGCT 1096860 Query 46774 AC 46775 || Sbjct 1096861 AC 1096862 >seq94266 Length=584714 Score = 89.7 bits (98), Expect = 7e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 76598 ACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGT 76657 ||||||||||| ||||||||||| ||||| || |||| || || |||| || || | Sbjct 89249 ACCCGTTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAGAGGTCTCTGGCTCGCTGC 89308 Query 76658 TCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGT 76717 || || || || || ||||| || || || || ||||| | ||| || | |||||||| Sbjct 89309 TCCTCCTTCCCGGTGTTCTTCTTCAGGTCAAGAAACTCAAAAATGTCCAAGTGCCATGGC 89368 Query 76718 TCTAGATATATCGC 76731 || ||||| || || Sbjct 89369 TCCAGATAGATGGC 89382 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || || ||||| || | ||| ||||||||||| || ||||| || ||||| || || ||| Sbjct 92465 GTGCCAGCATTGAAGAGTGTGGGAGATGCATGGGTAAACCACTTCTCAGATAGGAGGTTG 92524 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 || |||||||| | || || || || || || ||||| |||| || | ||||| | Sbjct 92525 TAGGTTTCAATCGCAGCATCGATGTCATTTTTGTGGATTCCCACAGATACCCTCATCAGC 92584 Query 77114 ATATGCTGAGGTCGTTC 77130 || || || || ||||| Sbjct 92585 ATGTGTTGGGGGCGTTC 92601 >seq54353 Length=924 Score = 89.7 bits (98), Expect = 7e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 76598 ACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGT 76657 ||||||||||| ||||||||||| ||||| || |||| || || |||| || || | Sbjct 629 ACCCGTTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAGAGGTCTCTGGCTCGCTGC 688 Query 76658 TCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGT 76717 || || || || || ||||| || || || || ||||| | ||| || | |||||||| Sbjct 689 TCCTCCTTCCCGGTGTTCTTCTTCAGGTCAAGAAACTCAAAAATGTCCAAGTGCCATGGC 748 Query 76718 TCTAGATATATCGC 76731 || ||||| || || Sbjct 749 TCCAGATAGATGGC 762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 711686559831360