Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chelonia_20mydas_20[refseq_20GCF_5F000344595.1_202013-03-18] 140,023 sequences; 2,208,410,377 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq108923 127 5e-24 seq51508 109 1e-18 >seq108923 Length=1180579 Score = 127 bits (140), Expect = 5e-24 Identities = 162/220 (74%), Gaps = 10/220 (5%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | || || || || ||||| ||||||||||| |||| | || | ||||||| Sbjct 1013518 AGGACCAAGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCT 1013459 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| ||||| ||||| | ||||||||| || | | || ||||| || | Sbjct 1013458 TCCAGCTGCTTT--CCGGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGT 1013401 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAA 152067 |||| ||||| |||||| |||| | | |||| ||| ||| ||||| || || | Sbjct 1013400 CTTGGATTTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCCACTTCTAGGGTGA 1013344 Query 152068 TAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 | ||||||||||| | || ||||| |||| ||||||||| Sbjct 1013343 TGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCATTTT 1013304 Score = 113 bits (124), Expect = 1e-19 Identities = 157/217 (72%), Gaps = 10/217 (5%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | || || || || ||||| ||||||||||| |||| | || | ||||||| Sbjct 1013746 AGGACCAAGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCT 1013687 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || | ||||| ||||| ||||| | ||||||||| || | | || ||||| || | Sbjct 1013686 TCCAACTGCTTT--CCGGCAAAGATCAACCTCTGCTGATCTGGAGGAATGCCTTCTTTGT 1013629 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAA 152067 |||| ||||| |||||| |||| | | |||| ||| ||| || || || || | Sbjct 1013628 CTTGGATTTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCCACCTCTAGGGTGA 1013572 Query 152068 TAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | ||||||||||| | || ||||| |||| |||||| Sbjct 1013571 TGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 1013535 >seq51508 Length=10579796 Score = 109 bits (120), Expect = 1e-18 Identities = 154/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || |||||||| ||||| || || || ||||||||||| || | | || | |||||| Sbjct 7029802 AGCACAAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCT 7029861 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| |||||||||||||| | | ||| ||||| || || Sbjct 7029862 TCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCTTTGTCC 7029921 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || |||||| |||| | |||| ||| ||| || || || || || Sbjct 7029922 TGGATCTTAGCCTTGACATTCTCAATAGTGTC---ACTGGGCTCAACCTCTAGGGTGATG 7029978 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || |||||||| |||| |||||| Sbjct 7029979 GTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 7030013 Score = 105 bits (116), Expect = 2e-17 Identities = 153/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || |||||||| || || || || || ||||||||||| || | | || | |||||| Sbjct 7030030 AGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCT 7030089 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| |||||||||||||| | | ||| ||||| || || Sbjct 7030090 TCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCTTTGTCC 7030149 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || |||||| |||| | |||| ||| ||| || || || || || Sbjct 7030150 TGGATCTTAGCCTTGACATTCTCAATAGTGTC---ACTGGGCTCAACCTCTAGGGTGATG 7030206 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || |||||||| |||| |||||| Sbjct 7030207 GTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 7030241 Score = 102 bits (112), Expect = 2e-16 Identities = 154/218 (71%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || |||||||| || || || || || ||||||||||| || | | || | |||||| Sbjct 7030258 AGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCT 7030317 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| |||||||||||||| | | ||| ||||| || || Sbjct 7030318 TCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCTTTGTCC 7030377 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || |||||| |||| | |||| ||| ||| || || || || || Sbjct 7030378 TGGATCTTAGCCTTGACATTCTCAATAGTGTC---ACTGGGCTCAACCTCTAGGGTGATG 7030434 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || ||||| || | |||||||| |||| |||||| || Sbjct 7030435 GTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATGTT 7030472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151750793923433