Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chelonia_20mydas_20[refseq_20GCF_5F000344595.1_202013-03-18] 140,023 sequences; 2,208,410,377 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq62993 183 3e-41 seq47454 150 2e-31 seq101034 98.7 1e-15 seq52717 89.7 5e-13 seq124979 82.4 8e-11 seq10001 82.4 8e-11 >seq62993 Length=806 Score = 183 bits (202), Expect = 3e-41 Identities = 185/240 (77%), Gaps = 18/240 (8%) Strand=Plus/Minus Query 8381 ATCTCCGCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCC 8440 |||| |||||||||||| || ||||| ||||| ||||| ||| |||| ||||||||||| Sbjct 797 ATCTTTGCTCACTGCAACTTCTGCCTCACGGGTCCAAGCGATTGTCCTCCCTCAGCCTCC 738 Query 8441 AGAGTAGCTGGGATTACA---------GGCAAAA------GCCACCACGCCAAGCTAATT 8485 |||||||||| |||| | | | | ||||||| ||| |||||||| Sbjct 737 CAGGTAGCTGGGACTACACCACACTGGGACTACACCAGCTGCCACCATGCCTAGCTAATT 678 Query 8486 TTT-GTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCT 8544 ||| | ||||||||||| || || ||||||| | ||||||||| |||||| || ||| | Sbjct 677 TTTTGGATTTTTAGTAGTGACAGCGTTTCACTGTATTGGCCAGGATGGTCTTGATCTCTT 618 Query 8545 GACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCA 8604 |||| |||||||| | ||||| ||||||| || |||||||||||||||| ||||||| Sbjct 617 CACCT--TGTGATCCCCTTGCCTTGGCCTCCAAATTTGCTGGGATTACAGGCCTGAGCCA 560 >seq47454 Length=1068 Score = 150 bits (166), Expect = 2e-31 Identities = 133/164 (81%), Gaps = 3/164 (2%) Strand=Plus/Minus Query 8449 TGGGATTACAGGCAAAAGCCACCACGCCAAGCTAATTTTTGTATTTTTAGTAGAGAGAGG 8508 |||||||| ||| |||||| ||| | | ||||||||||||||||| ||| || Sbjct 655 TGGGATTAGAGGTGCCTGCCACCGTGCCTGGTGACTTTTTGTATTTTTAGTACAGACGGG 596 Query 8509 GTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCATGTGATCCA-CCTGCCT 8567 |||||||||| |||||||||||||||| |||||||||||| | |||||||| ||||||| Sbjct 595 GTTTCACCATCTTGGCCAGGCTGGTCTTGAACTCCTGACCCC--GTGATCCACCCTGCCT 538 Query 8568 CGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCGCC 8611 ||||| |||| ||||||||| | ||||||||||||| ||| Sbjct 537 CGGCCAAAGGAAGTACTGGGATTATACGCATGAGCCACCGTGCC 494 Score = 84.2 bits (92), Expect = 2e-11 Identities = 65/76 (86%), Gaps = 6/76 (8%) Strand=Plus/Minus Query 8540 CTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGA----TTACAGG 8595 ||||||||| | ||||||||||||||||||||||||||||| |||||| ||| | | Sbjct 1068 CTCCTGACCCC--GTGATCCACCTGCCTCGGCCTCCCAAAGTACTGGGATTATTTATACG 1011 Query 8596 CATGAGCCACCGCGCC 8611 |||||||||||| ||| Sbjct 1010 CATGAGCCACCGTGCC 995 >seq101034 Length=481 Score = 98.7 bits (108), Expect = 1e-15 Identities = 72/84 (86%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 8525 CAGGCTGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCT 8584 |||||||||||| ||||||||| |||| | |||| |||||||| || |||||||||||| Sbjct 1 CAGGCTGGTCTCAAACTCCTGAGCTCAAGCAATCCTCCTGCCTCAGCATCCCAAAGTGCT 60 Query 8585 GGGATTACAGGCATGAGCCACCGC 8608 |||||||||||| || | ||||| Sbjct 61 GGGATTACAGGCGTGGACAACCGC 84 >seq52717 Length=966 Score = 89.7 bits (98), Expect = 5e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 8537 GAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGC 8596 |||||||||| |||| | |||||||| ||||| ||||||||| ||| ||||||||||| Sbjct 351 GAACTCCTGAGCTCAAGCGATCCACCGGCCTCAGCCTCCCAAGTAGCTAGGATTACAGGC 292 Query 8597 ATGAGCCACCGCGCCTGGC 8615 || ||||||||||| ||| Sbjct 291 GTGCGCCACCGCGCCCGGC 273 >seq124979 Length=358 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/72 (86%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 8545 GACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCA 8604 ||||||| ||||| |||| |||| ||||||||||| |||| ||||||||||| ||||||| Sbjct 1 GACCTCAGGTGATTCACCCGCCTTGGCCTCCCAAATTGCT-GGATTACAGGCGTGAGCCA 59 Query 8605 CCGCGCCTGGCC 8616 || ||| || || Sbjct 60 CCACGCTTGACC 71 >seq10001 Length=4979691 Score = 82.4 bits (90), Expect = 8e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 23772 ATCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGC 23831 |||| | || || ||||| || || | ||| |||||||| ||||| || ||||| ||||| Sbjct 1099779 ATCTTTAATGTAAGTATCTATGAGCAGACTGTACATTTCTGAATGTATGTTTTCCATAGC 1099838 Query 23832 AATCTGAAACCCATAAAAACATCTAGCTTC 23861 |||||| || ||||| ||||| | |||||| Sbjct 1099839 AATCTGGAAGCCATAGAAACAGCGAGCTTC 1099868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 520575246072200