Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chelonia_20mydas_20[refseq_20GCF_5F000344595.1_202013-03-18] 140,023 sequences; 2,208,410,377 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq62279 163 4e-35 seq48951 134 2e-26 >seq62279 Length=12999854 Score = 163 bits (180), Expect = 4e-35 Identities = 183/245 (75%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || ||||| | |||||| || || |||||||| || |||||||| ||||| |||||| Sbjct 4166493 TCACCGATGAGGATGAGGCGGGTTGTCTGGAAGAGCTGCTCGTCGCTCCACGTTGGATGC 4166552 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || || ||||| || ||||| || | |||||| || | |||||||| || || |||||| Sbjct 4166553 TCCTGCTTCAGCACGTCGCAGACTCGGTTGTGCTCACGAAGCCAGATGGTCGCATACATC 4166612 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411 |||||||| || | |||||| || ||| || || |||||||| || | | || ||| Sbjct 4166613 ATGAGCCCCGGCAGCAGGCCGAACATCTCCTGGCCCACAGCCAGTTGCTTCTCTTTGGGA 4166672 Query 9412 ACTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCA 9471 ||||||| ||||||||||| ||| | | || ||||| ||| |||||||| || Sbjct 4166673 GTGCCGGGAGGGTAGATCATGTGAACCGGAGCATCGAGGACCGTGGGTGGATACATCTCT 4166732 Query 9472 CCGTC 9476 || || Sbjct 4166733 CCATC 4166737 Score = 107 bits (118), Expect = 3e-18 Identities = 211/310 (68%), Gaps = 4/310 (1%) Strand=Plus/Plus Query 8278 ATCGGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTG 8337 ||| || || |||| || | ||||||||| | |||||||| ||| || || ||| Sbjct 4159581 ATCTGGCACGTGGAATGCCACATACGGACACCGCCTGACGTTGAGACACACGAGCTTCTG 4159640 Query 8338 AATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCT--CCGCCGAAGGTGCTGGGCTTC 8395 | | || |||| |||||| | || || ||| |||||||| |||||||||||| Sbjct 4159641 GAGCGAAGCTGTCTTCACGATCTCAAAGCCA--GTCGAGCCGCCGAAAGTGCTGGGCTTC 4159698 Query 8396 CAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCC 8455 ||||| | || ||||||||| ||| | | || ||||| ||||| ||||| || || Sbjct 4159699 CAGTATTCTGGAGAGCAGATGGGGTTTCCGAAAAGCCCTTTCAGGGAAAACGGGGCTCCA 4159758 Query 8456 AACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCG 8515 | ||| | || ||||| || || || | ||| || || || || | ||| || || Sbjct 4159759 ATCTCCACCATACTCTCCCCAAAAATAGAGTTTGGCTGGCATTTCTCAAGCAACAAACCA 4159818 Query 8516 GTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCC 8575 | || | ||||| || | | ||||||||| || || || || || ||||| Sbjct 4159819 GGATAAAACTCCAAGGCATTAATGTCTCCGTATAGCTTTTCCAGCTCTGCCGCTTTCTCC 4159878 Query 8576 TTTTCTCCTG 8585 | |||||||| Sbjct 4159879 TCTTCTCCTG 4159888 >seq48951 Length=15760405 Score = 134 bits (148), Expect = 2e-26 Identities = 175/242 (72%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 ||||| | || || |||||||| ||||| ||| |||||||||||| | || || ||| Sbjct 14481258 ATGAGCCTGGTAGTTTGGAACAGCTGCTCATCATCCCATTCTGGATGCACCTGCTTAAGA 14481199 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 ||||| || || | ||||| ||||||||||| || ||||| |||||||| | || || Sbjct 14481198 ACATCACAGACTCGATTGTGCTCCCTGAGCCATATTGTGGCATACATCATTAAACCTGGG 14481139 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 |||| ||||| |||| || || |||| | ||| || || || | | || || Sbjct 14481138 ACCAAACCAAACACCTCCTGGCCTACAGAAAATTGCAGGTGCTCAGGAATATGAGGTGGG 14481079 Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATC 9483 |||||||| | ||| ||| || || | ||| || |||||||| || ||||||||| Sbjct 14481078 TAGATCATTTCTGCCTCAGTGTCCTTCACAGTGGGAGGGTACATTTCTCCATCAATCATC 14481019 Query 9484 TG 9485 || Sbjct 14481018 TG 14481017 Score = 131 bits (144), Expect = 2e-25 Identities = 220/317 (69%), Gaps = 1/317 (0%) Strand=Plus/Minus Query 8289 GGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGC 8348 |||| |||| | ||||| ||||| ||||| | |||| || || | | || Sbjct 14484639 GGAAGGCGGTGATGGGACAGCCCTTCACGTTATTGCAGATGAGCTTTTGTAGGGAGGCAG 14484580 Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 | |||| || | || ||||| | ||| || |||||||| || ||||||||| |||| | Sbjct 14484579 TATTGATTATTTCAAAGCCCACTTTTCCACCAAAGGTGCTTGGTTTCCAGTACTCCGGAG 14484520 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 | ||||| | || |||| || ||||| | ||||| || || || | || | || Sbjct 14484519 AACAGATAGCATTTCCCATCAGCCCTTTCAAAGAGAATGGTGCTCCAAGTTCCACCATAG 14484460 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 ||||||| |||||||| | ||||| ||| |||| || | | || | |||||||||| Sbjct 14484459 TCTCACCAAAGATGGCACTAGGACGAGGCCTTTCTACTAGAAGGCCAGGATACAGCTCCA 14484400 Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT-T 8587 ||| || | ||||| ||||| | | ||| || || || || ||||||||||| Sbjct 14484399 TAGCATCAATATCTCCATAAAGCTCTTCTAATTCAGCTGCCATTTCTTTTTCTCCTGTAA 14484340 Query 8588 TTATTAATAAAAAATAA 8604 | |||||||| |||||| Sbjct 14484339 TAATTAATAATAAATAA 14484323 Score = 102 bits (112), Expect = 1e-16 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 9646 TGTTCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCT 9705 || |||||||||||| || || |||| |||||||| || |||| ||| ||| | Sbjct 14479783 TGATCTTACCCCATGGCCAAGAGCTTTGGTGAAGGCTGGCCCTCTGTGGTGATCTGTCTT 14479724 Query 9706 AAAAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGG 9765 ||| |||||||| ||||||||||| |||| || | ||||| | || ||||| || || Sbjct 14479723 AAAGAACTGGTGGGTGAAATGTTGAGCAAAGAACGTGAACATCATATTTGTGCCTTGAGG 14479664 Query 9766 ATCGGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAG 9825 ||| ||| | || | ||| || ||| ||| |||||||| ||| | ||| || || Sbjct 14479663 ATCAGGAATAAATTTTTTCCTCAGCAGAAATTTCTCCACAACTATTGCGGAATCTGGGAG 14479604 Query 9826 CTTTGTTTTACCTG 9839 || | ||||||| Sbjct 14479603 CTCCTTCTTACCTG 14479590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 715622059497920