Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chelonia_20mydas_20[refseq_20GCF_5F000344595.1_202013-03-18] 140,023 sequences; 2,208,410,377 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq51508 111 1e-19 >seq51508 Length=10579796 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 || ||| || | ||||| | ||| ||||| || ||| |||||||| ||||| ||||| Sbjct 7029783 ACAGCCACCCCTCAGACGCAGCACAAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTC 7029842 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751 || ||||| || | || || ||||||||||| || || ||||| | ||| ||||| | Sbjct 7029843 AGACAGGGTACGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGG 7029902 Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTC 41811 || | || || |||||| ||| || ||| | | | |||||| || | ||| Sbjct 7029903 TGGGATGCCTTCTTTGTCCTGGATCTTAGCCTTGACATTCTCAATAGTGTCACTGGGCTC 7029962 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| | || || || || || ||||| ||||| || || |||||||| Sbjct 7029963 AACCTCTAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 7030013 Score = 111 bits (122), Expect = 1e-19 Identities = 157/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||| ||||| || ||| |||||||| ||||| ||||| || ||||| || Sbjct 7030252 AGACGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTACGG 7030311 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| || || ||||| | ||| ||||| | || | || || Sbjct 7030312 CCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCT 7030371 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 |||||| ||| || ||| | | | |||||| || | ||| ||||| | || Sbjct 7030372 TTGTCCTGGATCTTAGCCTTGACATTCTCAATAGTGTCACTGGGCTCAACCTCTAGGGTG 7030431 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || || || |||| ||||| || || ||||||||||| Sbjct 7030432 ATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATGTT 7030472 Score = 109 bits (120), Expect = 5e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||| ||||| || ||| |||||||| ||||| ||||| || ||||| || Sbjct 7030024 AGACGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTACGG 7030083 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| || || ||||| | ||| ||||| | || | || || Sbjct 7030084 CCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCT 7030143 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 |||||| ||| || ||| | | | |||||| || | ||| ||||| | || Sbjct 7030144 TTGTCCTGGATCTTAGCCTTGACATTCTCAATAGTGTCACTGGGCTCAACCTCTAGGGTG 7030203 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || ||||| ||||| || || |||||||| Sbjct 7030204 ATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 7030241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461494835087600