Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03- 31] 78,595 sequences; 2,365,766,571 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq78526 109 4e-19 seq20 109 4e-19 >seq78526 Length=7101863 Score = 109 bits (120), Expect = 4e-19 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092 |||| ||||| ||||| || || |||||||| || |||||||| ||||| | ||| |||| Sbjct 5479905 CTTTGTATTCAGCTCCAAAGTGTCTCCACTGGAAACCATACACTGGTCCCAAATCCCCTT 5479964 Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152 | ||||||| ||||| ||||||| || ||| | |||||||| |||||||||| Sbjct 5479965 CTGTTCTGTCAGTGAAACCTTGTTTATCCAAGAATTCACGTGATCCATTGGCATCCCAAA 5480024 Query 102153 TGTGCACGCCAGCTGCTGATAGCTCTTT 102180 | | ||| || ||| || |||||||| Sbjct 5480025 TCTTCACTCCTTTTGCAGAGAGCTCTTT 5480052 >seq20 Length=13974604 Score = 109 bits (120), Expect = 4e-19 Identities = 90/110 (82%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| || || |||| || || | |||||||||| ||||||| || || ||||||||||| Sbjct 8507581 CTTGAGCTCTCTGCTAAGCACTATATTAATTCTGTCTTTTAAGGGGCGATTCTTCTCAGG 8507522 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCTG 4399 |||||||||||| ||| | |||||||| |||| | |||||||||| ||| Sbjct 8507521 AATTGAGAACCAGGTCCTCTTACCCATTATCAACACATTCTGTTTACCTG 8507472 Score = 86.0 bits (94), Expect = 5e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 4058 GTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCATGA 4117 ||||||||||||| | ||||| |||||||||||| ||||||| |||||| || |||| | Sbjct 8537640 GTTTGTATTTCTCCAAATCAATTTCTGGAAAAAATGTGTCACTTTCAAACTCATGCAAAA 8537581 Query 4118 TCCTAGTCACAAACA 4132 | || |||||||||| Sbjct 8537580 TTCTTGTCACAAACA 8537566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 360905165942345