Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03- 31] 78,595 sequences; 2,365,766,571 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq140 96.9 4e-15 seq78549 82.4 9e-11 seq135 82.4 9e-11 >seq140 Length=3053534 Score = 96.9 bits (106), Expect = 4e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 53384 CCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCA 53443 ||| | || || |||||||| || | || | || |||||||| || | || || ||| Sbjct 12792 CCTTCGTAAGTTTCGTATGGGCCATGCTCTTTGGCGAGTTCACAGCTGGATTCCAAAGCA 12851 Query 53444 CCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAAT 53503 |||||||||||||| |||||||||| || || | || || || |||| ||||| Sbjct 12852 CCGTAATAAATGGTCTCGAAGATCTGCTGGTTCAACAACTGGGCCTCGGGGCTTTCAAAG 12911 Query 53504 GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTA 53563 || || | | || || ||||| || || | ||||| || ||||| ||||| || | | Sbjct 12912 GGGTATCTCATCAGGATGAACGCATCCGCCAGACCTTGCACTCCAATGCCGATGGGACGA 12971 Query 53564 TGTCTCTTATTAGAGATTTCAGC 53586 || | || || |||| ||||| Sbjct 12972 TGGCGTTTGTTGGAGAGCTCAGC 12994 Score = 87.8 bits (96), Expect = 2e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 |||| || | ||| || ||||||||||| | || || || || || || || ||||| | Sbjct 26182 CACTGAACACTTTCTTGGTTTCTTTGTGCAAGTTGGAGACCGCGATCCTTGCTGCTAGGA 26241 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 ||||||| || || || | ||||| || || ||| | || || | ||| || |||| Sbjct 26242 TGGCATAGTCGGGGTGCTTGGTAGTGAGGGTTGCGGCTGTCTCAGCAGCCAGTGTATCCA 26301 Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933 ||| || ||||| || ||| | || | || ||||| |||||||| Sbjct 26302 GTTCCACAGTTGTGACACCACTGTACAGACCCTGGATCACCTTCAT 26347 >seq78549 Length=11360908 Score = 82.4 bits (90), Expect = 9e-11 Identities = 102/139 (73%), Gaps = 3/139 (2%) Strand=Plus/Plus Query 23788 TTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTC---TTGAGACATAACTCCCATTT 23844 |||||||||| |||| |||| ||| || ||| || |||||||||||||| | Sbjct 7626560 TTTAAAAGTCTGCATCCAAAGTGAAAGAGTTATCTGTGGATTTTGACATAACTCCCATCT 7626619 Query 23845 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTT 23904 | |||||||| || || || || || || || ||||| || ||||| | || ||||| | Sbjct 7626620 TCTGGTATTCTCCTACTCGCTTCTCAAAGAAGTTAGTCTTGCCTTCCAGCGAGATATTCT 7626679 Query 23905 CCATGAAATCGGATGGATT 23923 |||| || || ||||||| Sbjct 7626680 CCATAAAGTCAAATGGATT 7626698 >seq135 Length=2957239 Score = 82.4 bits (90), Expect = 9e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 24632 CACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 24691 ||| ||||| ||||||| || || || | ||||||||||||||| ||||| || || | Sbjct 2796813 CACCTCTTCTGCTGTCCAGAAGGAAGCTTGTGCCTTTTTATACATGTTCCATATATCCGG 2796754 Query 24692 ATATTGAATTGGAAAAATAACAAATCTATTTGGATTTTTT 24731 ||||| | ||| || || ||||||||| ||||||||| Sbjct 2796753 GTATTGGAGTGGGAAGATGACAAATCTACGAGGATTTTTT 2796714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593138305635600