Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03-
31] 78,595 sequences; 2,365,766,571 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq140 96.9 4e-15
seq78549 82.4 9e-11
seq135 82.4 9e-11
>seq140
Length=3053534
Score = 96.9 bits (106), Expect = 4e-15
Identities = 143/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 53384 CCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCA 53443
||| | || || |||||||| || | || | || |||||||| || | || || |||
Sbjct 12792 CCTTCGTAAGTTTCGTATGGGCCATGCTCTTTGGCGAGTTCACAGCTGGATTCCAAAGCA 12851
Query 53444 CCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAAT 53503
|||||||||||||| |||||||||| || || | || || || |||| |||||
Sbjct 12852 CCGTAATAAATGGTCTCGAAGATCTGCTGGTTCAACAACTGGGCCTCGGGGCTTTCAAAG 12911
Query 53504 GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTA 53563
|| || | | || || ||||| || || | ||||| || ||||| ||||| || | |
Sbjct 12912 GGGTATCTCATCAGGATGAACGCATCCGCCAGACCTTGCACTCCAATGCCGATGGGACGA 12971
Query 53564 TGTCTCTTATTAGAGATTTCAGC 53586
|| | || || |||| |||||
Sbjct 12972 TGGCGTTTGTTGGAGAGCTCAGC 12994
Score = 87.8 bits (96), Expect = 2e-12
Identities = 119/166 (72%), Gaps = 0/166 (0%)
Strand=Plus/Plus
Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827
|||| || | ||| || ||||||||||| | || || || || || || || ||||| |
Sbjct 26182 CACTGAACACTTTCTTGGTTTCTTTGTGCAAGTTGGAGACCGCGATCCTTGCTGCTAGGA 26241
Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887
||||||| || || || | ||||| || || ||| | || || | ||| || ||||
Sbjct 26242 TGGCATAGTCGGGGTGCTTGGTAGTGAGGGTTGCGGCTGTCTCAGCAGCCAGTGTATCCA 26301
Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933
||| || ||||| || ||| | || | || ||||| ||||||||
Sbjct 26302 GTTCCACAGTTGTGACACCACTGTACAGACCCTGGATCACCTTCAT 26347
>seq78549
Length=11360908
Score = 82.4 bits (90), Expect = 9e-11
Identities = 102/139 (73%), Gaps = 3/139 (2%)
Strand=Plus/Plus
Query 23788 TTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTC---TTGAGACATAACTCCCATTT 23844
|||||||||| |||| |||| ||| || ||| || |||||||||||||| |
Sbjct 7626560 TTTAAAAGTCTGCATCCAAAGTGAAAGAGTTATCTGTGGATTTTGACATAACTCCCATCT 7626619
Query 23845 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTT 23904
| |||||||| || || || || || || || ||||| || ||||| | || ||||| |
Sbjct 7626620 TCTGGTATTCTCCTACTCGCTTCTCAAAGAAGTTAGTCTTGCCTTCCAGCGAGATATTCT 7626679
Query 23905 CCATGAAATCGGATGGATT 23923
|||| || || |||||||
Sbjct 7626680 CCATAAAGTCAAATGGATT 7626698
>seq135
Length=2957239
Score = 82.4 bits (90), Expect = 9e-11
Identities = 78/100 (78%), Gaps = 0/100 (0%)
Strand=Plus/Minus
Query 24632 CACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 24691
||| ||||| ||||||| || || || | ||||||||||||||| ||||| || || |
Sbjct 2796813 CACCTCTTCTGCTGTCCAGAAGGAAGCTTGTGCCTTTTTATACATGTTCCATATATCCGG 2796754
Query 24692 ATATTGAATTGGAAAAATAACAAATCTATTTGGATTTTTT 24731
||||| | ||| || || ||||||||| |||||||||
Sbjct 2796753 GTATTGGAGTGGGAAGATGACAAATCTACGAGGATTTTTT 2796714
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593138305635600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |