Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03- 31] 78,595 sequences; 2,365,766,571 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq78526 107 2e-18 seq2 95.1 1e-14 >seq78526 Length=7101863 Score = 107 bits (118), Expect = 2e-18 Identities = 116/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 145750 AGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGC 145809 ||||| |||| ||||| | ||| || || ||||| || |||||||| || ||||| ||| Sbjct 5468950 AGGCCTGTGACATGGGCAATCATATATGTGAGCAGTGAATAGCTGGCGATATTGAAAGGC 5469009 Query 145810 ACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCC 145869 |||||||| |||||||| || || | ||| |||| |||||| || || || || Sbjct 5469010 ACCCCCAGTCCCATGTCTCCAGATCTCTGATACAACTGGCAAGACAGTTCACCATTTAGA 5469069 Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCA 145903 || || ||||||||||| |||||| || |||| Sbjct 5469070 ACATAAAACTGGCACAGAGCGTGGCATGGAGGCA 5469103 >seq2 Length=68452538 Score = 95.1 bits (104), Expect = 1e-14 Identities = 539/852 (63%), Gaps = 25/852 (3%) Strand=Plus/Plus Query 9499 TTTGGGTTGTTGGGCAATATCTTAGTGGTGATTATTGTCATAAGATACATGAAGATCAAA 9558 ||||| || |||||||| | | || ||| | || | |||| ||||| |||| | | | Sbjct 29473606 TTTGGCCTGGTGGGCAATGTGCTCGTTGTGCTGATCCTGATAAAATACAAGAAGCTGAGA 29473665 Query 9559 AACCTCACTAACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACT 9618 | | | ||| |||| | ||| | || ||||||| || || ||||| ||| |||| | Sbjct 29473666 AGCATGACTGACATCTATCTGCTGAATCTGGCAATTTCCGATTTGCTTTTTATTTTTTCC 29473725 Query 9619 TTGCCATTTTGGATGCACTATATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTG 9678 ||||||||||| |||| || | | | ||| ||| |||||| | | | || Sbjct 29473726 CTGCCATTTTGGGCTTACTACATAGCA------CGTGAGTGGGATTTTGGAAATGCAATG 29473779 Query 9679 TGTAAACTGCT---CAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATC 9735 |||||| | || |||||| | | || | || | | ||||| | |||| ||| Sbjct 29473780 TGTAAAATTCTTTCGAGGGGTCTATTTTGC-TGGC-TTCTACAGTGGAATGTTTTTCATA 29473837 Query 9736 ATCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGCTTTGAGGTTT 9795 || || | ||| |||| || ||||| || ||||| |||| || |||||| | | Sbjct 29473838 ATACTTTTGACAATAGATAGATATCTGGCCATTGTCCATGCAGTGTTTGCTTTAAAAGCT 29473897 Query 9796 AGAACAGTAACCTGTGGCATAGTTACCTGTGTATGT-ACCTGGTTTCTGGCAGGGTTGTT 9854 || ||||| |||| |||||| | || |||| ||| | ||| | | ||| || Sbjct 29473898 AGGACAGTTACCTATGGCATCCTCACAAGTGT-TGTCATTTGGGGTATTGCAATATTAGC 29473956 Query 9855 GTCCCTCCCTGAATTTTTCTTTCATGGACACCAAGATGACAATGGTAGGGTTCAGTGTGA 9914 || || || | ||| | |||||| | ||| | || | | | | | | | Sbjct 29473957 CTCTCTTCCAGGGTTTATATTTCATAGTGTTCAAAAGGAAGGTCCT-CGCTGGACTTGCA 29474015 Query 9915 TC-CTTACTACCCAGAGATGTCTACAAATGTTTGGAGGCGCGCCCACGTTGCAAAGGTGA 9973 | || | || ||| | | | ||| | ||||||| || || |||| ||| Sbjct 29474016 GCTCTCATTATCCATCAAATTATGAAAAAGAATGGAGGCAATTCCTGATTTTAAAGATGA 29474075 Query 9974 TTATGTTAAGTCTCATTTTGCCTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCA 10033 || | | || | | || | |||||||| |||||||| | |||||| | Sbjct 29474076 ACATCCTGGGACTTGTCATTCCATTTGTCATTATGATCTTCTGCTACATAGAAATTATAA 29474135 Query 10034 GAAGACTGTTGAGGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCA 10093 || | | |||| || | |||| || | ||||| ||||||| || ||| || Sbjct 29474136 AAATATTACTGAGACGTAGGAATGAGAAAAAACATAAGGCAGTCAGGCTTATTTTTATCC 29474195 Query 10094 TCATGGTGGCCTATTTTGTTTTTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCT 10153 | ||| | | |||||| | || |||||||| |||||||||||| | || | | || | Sbjct 29474196 TAATGATTGTTTATTTTATCTTCTGGACACCATACAACATTGTTGTTCTCATATACACGT 29474255 Query 10154 TTCACGCAACCCTT--CTTA---ACCTGCAGTGTGCATTGAGCAGTAACTTGGACATGGC 10208 |||| | | || | || ||||| | | || |||||| | |||| || || Sbjct 29474256 TTCAAGATTCATTTTCCCTAAATACCTG-TGAGGGC----AGCAGTCAGCTGGAGATAGC 29474310 Query 10209 TCTGCTGATAACAAAAACAGTAGCCTACACACACTGTTGCATCAACCCAGTGATCTACGC 10268 | | | ||| || | | || |||||||| |||||||| |||||||| || Sbjct 29474311 AATCCAAGTGACAGAAGCTATTGCAATGTTCCACTGTTGTATCAACCCTGTGATCTATGC 29474370 Query 10269 GTTCGTGGGGGAGAAGTTTAGAAGACACCTGTACCACTTCTTCCACACCTACGTGGCCAT 10328 |||| || || |||||||| | | | || || ||| ||||| | || | || || Sbjct 29474371 CTTCGCTGGTGAAAAGTTTAGGAAATATCTTTATACCTTTTTCCAAAAAGACATTGCAAT 29474430 Query 10329 CTACCTCTGCAA 10340 |||||||||||| Sbjct 29474431 CTACCTCTGCAA 29474442 Score = 95.1 bits (104), Expect = 1e-14 Identities = 539/852 (63%), Gaps = 25/852 (3%) Strand=Plus/Plus Query 176385 TTTGGGTTGTTGGGCAATATCTTAGTGGTGATTATTGTCATAAGATACATGAAGATCAAA 176444 ||||| || |||||||| | | || ||| | || | |||| ||||| |||| | | | Sbjct 29473606 TTTGGCCTGGTGGGCAATGTGCTCGTTGTGCTGATCCTGATAAAATACAAGAAGCTGAGA 29473665 Query 176445 AACCTCACTAACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACT 176504 | | | ||| |||| | ||| | || ||||||| || || ||||| ||| |||| | Sbjct 29473666 AGCATGACTGACATCTATCTGCTGAATCTGGCAATTTCCGATTTGCTTTTTATTTTTTCC 29473725 Query 176505 TTGCCATTTTGGATGCACTATATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTG 176564 ||||||||||| |||| || | | | ||| ||| |||||| | | | || Sbjct 29473726 CTGCCATTTTGGGCTTACTACATAGCA------CGTGAGTGGGATTTTGGAAATGCAATG 29473779 Query 176565 TGTAAACTGCT---CAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATC 176621 |||||| | || |||||| | | || | || | | ||||| | |||| ||| Sbjct 29473780 TGTAAAATTCTTTCGAGGGGTCTATTTTGC-TGGC-TTCTACAGTGGAATGTTTTTCATA 29473837 Query 176622 ATCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGCTTTGAGGTTT 176681 || || | ||| |||| || ||||| || ||||| |||| || |||||| | | Sbjct 29473838 ATACTTTTGACAATAGATAGATATCTGGCCATTGTCCATGCAGTGTTTGCTTTAAAAGCT 29473897 Query 176682 AGAACAGTAACCTGTGGCATAGTTACCTGTGTATGT-ACCTGGTTTCTGGCAGGGTTGTT 176740 || ||||| |||| |||||| | || |||| ||| | ||| | | ||| || Sbjct 29473898 AGGACAGTTACCTATGGCATCCTCACAAGTGT-TGTCATTTGGGGTATTGCAATATTAGC 29473956 Query 176741 GTCCCTCCCTGAATTTTTCTTTCATGGACACCAAGATGACAATGGTAGGGTTCAGTGTGA 176800 || || || | ||| | |||||| | ||| | || | | | | | | | Sbjct 29473957 CTCTCTTCCAGGGTTTATATTTCATAGTGTTCAAAAGGAAGGTCCT-CGCTGGACTTGCA 29474015 Query 176801 TC-CTTACTACCCAGAGATGTCTACAAATGTTTGGAGGCGCGCCCACGTTGCAAAGGTGA 176859 | || | || ||| | | | ||| | ||||||| || || |||| ||| Sbjct 29474016 GCTCTCATTATCCATCAAATTATGAAAAAGAATGGAGGCAATTCCTGATTTTAAAGATGA 29474075 Query 176860 TTATGTTAAGTCTCATTTTGCCTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCA 176919 || | | || | | || | |||||||| |||||||| | |||||| | Sbjct 29474076 ACATCCTGGGACTTGTCATTCCATTTGTCATTATGATCTTCTGCTACATAGAAATTATAA 29474135 Query 176920 GAAGACTGTTGAGGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCA 176979 || | | |||| || | |||| || | ||||| ||||||| || ||| || Sbjct 29474136 AAATATTACTGAGACGTAGGAATGAGAAAAAACATAAGGCAGTCAGGCTTATTTTTATCC 29474195 Query 176980 TCATGGTGGCCTATTTTGTTTTTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCT 177039 | ||| | | |||||| | || |||||||| |||||||||||| | || | | || | Sbjct 29474196 TAATGATTGTTTATTTTATCTTCTGGACACCATACAACATTGTTGTTCTCATATACACGT 29474255 Query 177040 TTCACGCAACCCTT--CTTA---ACCTGCAGTGTGCATTGAGCAGTAACTTGGACATGGC 177094 |||| | | || | || ||||| | | || |||||| | |||| || || Sbjct 29474256 TTCAAGATTCATTTTCCCTAAATACCTG-TGAGGGC----AGCAGTCAGCTGGAGATAGC 29474310 Query 177095 TCTGCTGATAACAAAAACAGTAGCCTACACACACTGTTGCATCAACCCAGTGATCTACGC 177154 | | | ||| || | | || |||||||| |||||||| |||||||| || Sbjct 29474311 AATCCAAGTGACAGAAGCTATTGCAATGTTCCACTGTTGTATCAACCCTGTGATCTATGC 29474370 Query 177155 GTTCGTGGGGGAGAAGTTTAGAAGACACCTGTACCACTTCTTCCACACCTACGTGGCCAT 177214 |||| || || |||||||| | | | || || ||| ||||| | || | || || Sbjct 29474371 CTTCGCTGGTGAAAAGTTTAGGAAATATCTTTATACCTTTTTCCAAAAAGACATTGCAAT 29474430 Query 177215 CTACCTCTGCAA 177226 |||||||||||| Sbjct 29474431 CTACCTCTGCAA 29474442 Score = 89.7 bits (98), Expect = 6e-13 Identities = 234/351 (67%), Gaps = 12/351 (3%) Strand=Plus/Minus Query 176385 TTTGGGTTGTTGGGCAATATCTTAGTGGTGATTATTGTCATAAGATACATGAAGATCAAA 176444 ||||| || |||||||| |||| ||| | || | |||| ||||| |||| | | | Sbjct 29234169 TTTGGCCTGCTGGGCAATGCGCTAGTTGTGCTGATCCTGATAAAATACAAGAAGCTGAGA 29234110 Query 176445 AACCTCACTAACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACT 176504 | | | ||| |||| | ||| | || ||||||| || || ||||| ||| || | | Sbjct 29234109 AGCATGACTGACATCTATCTGCTGAATCTGGCAATTTCCGATTTGCTTTTTATTCTTTCC 29234050 Query 176505 TTGCCATTTTGGATGCACTATATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTG 176564 ||||||||||| |||| | | | ||||| ||| |||||| | | | || Sbjct 29234049 CTGCCATTTTGGGCTTACTACGTAGCA------CATGAATGGGATTTTGGAAATGCAATG 29233996 Query 176565 TGTAAACTGC--TCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCA 176622 |||||| | | |||||||| | | | | || | | || || | |||| ||| | Sbjct 29233995 TGTAAAATTCTTTCAGGGGTCTATTATGC-TGGC-TTCTATAGTGGAATGTTTTTCATAA 29233938 Query 176623 TCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGCTTTGAGGTTTA 176682 | || | ||| |||| || ||||| || ||||| |||| || |||||| | | || Sbjct 29233937 TACTTTTGACAATAGATAGATATCTGGCCATTGTCCATGCAGTGTTTGCTTTAAAGGCTA 29233878 Query 176683 GAACAGTAACCTGTGGCATAGTTACCTGTGTATGT-ACCTGGTTTCTGGCA 176732 | ||||| |||| |||||| | || |||| ||| || ||| || | ||| Sbjct 29233877 GGACAGTTACCTATGGCATCCTCACAAGTGT-TGTCACTTGGGTTGTTGCA 29233828 Score = 89.7 bits (98), Expect = 6e-13 Identities = 234/351 (67%), Gaps = 12/351 (3%) Strand=Plus/Minus Query 9499 TTTGGGTTGTTGGGCAATATCTTAGTGGTGATTATTGTCATAAGATACATGAAGATCAAA 9558 ||||| || |||||||| |||| ||| | || | |||| ||||| |||| | | | Sbjct 29234169 TTTGGCCTGCTGGGCAATGCGCTAGTTGTGCTGATCCTGATAAAATACAAGAAGCTGAGA 29234110 Query 9559 AACCTCACTAACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACT 9618 | | | ||| |||| | ||| | || ||||||| || || ||||| ||| || | | Sbjct 29234109 AGCATGACTGACATCTATCTGCTGAATCTGGCAATTTCCGATTTGCTTTTTATTCTTTCC 29234050 Query 9619 TTGCCATTTTGGATGCACTATATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTG 9678 ||||||||||| |||| | | | ||||| ||| |||||| | | | || Sbjct 29234049 CTGCCATTTTGGGCTTACTACGTAGCA------CATGAATGGGATTTTGGAAATGCAATG 29233996 Query 9679 TGTAAACTGC--TCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCA 9736 |||||| | | |||||||| | | | | || | | || || | |||| ||| | Sbjct 29233995 TGTAAAATTCTTTCAGGGGTCTATTATGC-TGGC-TTCTATAGTGGAATGTTTTTCATAA 29233938 Query 9737 TCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGCTTTGAGGTTTA 9796 | || | ||| |||| || ||||| || ||||| |||| || |||||| | | || Sbjct 29233937 TACTTTTGACAATAGATAGATATCTGGCCATTGTCCATGCAGTGTTTGCTTTAAAGGCTA 29233878 Query 9797 GAACAGTAACCTGTGGCATAGTTACCTGTGTATGT-ACCTGGTTTCTGGCA 9846 | ||||| |||| |||||| | || |||| ||| || ||| || | ||| Sbjct 29233877 GGACAGTTACCTATGGCATCCTCACAAGTGT-TGTCACTTGGGTTGTTGCA 29233828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589497086423800