Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03-
31] 78,595 sequences; 2,365,766,571 total letters
Query= NC_001650.2
Length=184439
Score E
Sequences producing significant alignments: (Bits) Value
seq78526 107 2e-18
seq2 95.1 1e-14
>seq78526
Length=7101863
Score = 107 bits (118), Expect = 2e-18
Identities = 116/154 (75%), Gaps = 0/154 (0%)
Strand=Plus/Plus
Query 145750 AGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGC 145809
||||| |||| ||||| | ||| || || ||||| || |||||||| || ||||| |||
Sbjct 5468950 AGGCCTGTGACATGGGCAATCATATATGTGAGCAGTGAATAGCTGGCGATATTGAAAGGC 5469009
Query 145810 ACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCC 145869
|||||||| |||||||| || || | ||| |||| |||||| || || || ||
Sbjct 5469010 ACCCCCAGTCCCATGTCTCCAGATCTCTGATACAACTGGCAAGACAGTTCACCATTTAGA 5469069
Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCA 145903
|| || ||||||||||| |||||| || ||||
Sbjct 5469070 ACATAAAACTGGCACAGAGCGTGGCATGGAGGCA 5469103
>seq2
Length=68452538
Score = 95.1 bits (104), Expect = 1e-14
Identities = 539/852 (63%), Gaps = 25/852 (3%)
Strand=Plus/Plus
Query 9499 TTTGGGTTGTTGGGCAATATCTTAGTGGTGATTATTGTCATAAGATACATGAAGATCAAA 9558
||||| || |||||||| | | || ||| | || | |||| ||||| |||| | | |
Sbjct 29473606 TTTGGCCTGGTGGGCAATGTGCTCGTTGTGCTGATCCTGATAAAATACAAGAAGCTGAGA 29473665
Query 9559 AACCTCACTAACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACT 9618
| | | ||| |||| | ||| | || ||||||| || || ||||| ||| |||| |
Sbjct 29473666 AGCATGACTGACATCTATCTGCTGAATCTGGCAATTTCCGATTTGCTTTTTATTTTTTCC 29473725
Query 9619 TTGCCATTTTGGATGCACTATATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTG 9678
||||||||||| |||| || | | | ||| ||| |||||| | | | ||
Sbjct 29473726 CTGCCATTTTGGGCTTACTACATAGCA------CGTGAGTGGGATTTTGGAAATGCAATG 29473779
Query 9679 TGTAAACTGCT---CAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATC 9735
|||||| | || |||||| | | || | || | | ||||| | |||| |||
Sbjct 29473780 TGTAAAATTCTTTCGAGGGGTCTATTTTGC-TGGC-TTCTACAGTGGAATGTTTTTCATA 29473837
Query 9736 ATCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGCTTTGAGGTTT 9795
|| || | ||| |||| || ||||| || ||||| |||| || |||||| | |
Sbjct 29473838 ATACTTTTGACAATAGATAGATATCTGGCCATTGTCCATGCAGTGTTTGCTTTAAAAGCT 29473897
Query 9796 AGAACAGTAACCTGTGGCATAGTTACCTGTGTATGT-ACCTGGTTTCTGGCAGGGTTGTT 9854
|| ||||| |||| |||||| | || |||| ||| | ||| | | ||| ||
Sbjct 29473898 AGGACAGTTACCTATGGCATCCTCACAAGTGT-TGTCATTTGGGGTATTGCAATATTAGC 29473956
Query 9855 GTCCCTCCCTGAATTTTTCTTTCATGGACACCAAGATGACAATGGTAGGGTTCAGTGTGA 9914
|| || || | ||| | |||||| | ||| | || | | | | | | |
Sbjct 29473957 CTCTCTTCCAGGGTTTATATTTCATAGTGTTCAAAAGGAAGGTCCT-CGCTGGACTTGCA 29474015
Query 9915 TC-CTTACTACCCAGAGATGTCTACAAATGTTTGGAGGCGCGCCCACGTTGCAAAGGTGA 9973
| || | || ||| | | | ||| | ||||||| || || |||| |||
Sbjct 29474016 GCTCTCATTATCCATCAAATTATGAAAAAGAATGGAGGCAATTCCTGATTTTAAAGATGA 29474075
Query 9974 TTATGTTAAGTCTCATTTTGCCTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCA 10033
|| | | || | | || | |||||||| |||||||| | |||||| |
Sbjct 29474076 ACATCCTGGGACTTGTCATTCCATTTGTCATTATGATCTTCTGCTACATAGAAATTATAA 29474135
Query 10034 GAAGACTGTTGAGGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCA 10093
|| | | |||| || | |||| || | ||||| ||||||| || ||| ||
Sbjct 29474136 AAATATTACTGAGACGTAGGAATGAGAAAAAACATAAGGCAGTCAGGCTTATTTTTATCC 29474195
Query 10094 TCATGGTGGCCTATTTTGTTTTTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCT 10153
| ||| | | |||||| | || |||||||| |||||||||||| | || | | || |
Sbjct 29474196 TAATGATTGTTTATTTTATCTTCTGGACACCATACAACATTGTTGTTCTCATATACACGT 29474255
Query 10154 TTCACGCAACCCTT--CTTA---ACCTGCAGTGTGCATTGAGCAGTAACTTGGACATGGC 10208
|||| | | || | || ||||| | | || |||||| | |||| || ||
Sbjct 29474256 TTCAAGATTCATTTTCCCTAAATACCTG-TGAGGGC----AGCAGTCAGCTGGAGATAGC 29474310
Query 10209 TCTGCTGATAACAAAAACAGTAGCCTACACACACTGTTGCATCAACCCAGTGATCTACGC 10268
| | | ||| || | | || |||||||| |||||||| |||||||| ||
Sbjct 29474311 AATCCAAGTGACAGAAGCTATTGCAATGTTCCACTGTTGTATCAACCCTGTGATCTATGC 29474370
Query 10269 GTTCGTGGGGGAGAAGTTTAGAAGACACCTGTACCACTTCTTCCACACCTACGTGGCCAT 10328
|||| || || |||||||| | | | || || ||| ||||| | || | || ||
Sbjct 29474371 CTTCGCTGGTGAAAAGTTTAGGAAATATCTTTATACCTTTTTCCAAAAAGACATTGCAAT 29474430
Query 10329 CTACCTCTGCAA 10340
||||||||||||
Sbjct 29474431 CTACCTCTGCAA 29474442
Score = 95.1 bits (104), Expect = 1e-14
Identities = 539/852 (63%), Gaps = 25/852 (3%)
Strand=Plus/Plus
Query 176385 TTTGGGTTGTTGGGCAATATCTTAGTGGTGATTATTGTCATAAGATACATGAAGATCAAA 176444
||||| || |||||||| | | || ||| | || | |||| ||||| |||| | | |
Sbjct 29473606 TTTGGCCTGGTGGGCAATGTGCTCGTTGTGCTGATCCTGATAAAATACAAGAAGCTGAGA 29473665
Query 176445 AACCTCACTAACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACT 176504
| | | ||| |||| | ||| | || ||||||| || || ||||| ||| |||| |
Sbjct 29473666 AGCATGACTGACATCTATCTGCTGAATCTGGCAATTTCCGATTTGCTTTTTATTTTTTCC 29473725
Query 176505 TTGCCATTTTGGATGCACTATATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTG 176564
||||||||||| |||| || | | | ||| ||| |||||| | | | ||
Sbjct 29473726 CTGCCATTTTGGGCTTACTACATAGCA------CGTGAGTGGGATTTTGGAAATGCAATG 29473779
Query 176565 TGTAAACTGCT---CAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATC 176621
|||||| | || |||||| | | || | || | | ||||| | |||| |||
Sbjct 29473780 TGTAAAATTCTTTCGAGGGGTCTATTTTGC-TGGC-TTCTACAGTGGAATGTTTTTCATA 29473837
Query 176622 ATCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGCTTTGAGGTTT 176681
|| || | ||| |||| || ||||| || ||||| |||| || |||||| | |
Sbjct 29473838 ATACTTTTGACAATAGATAGATATCTGGCCATTGTCCATGCAGTGTTTGCTTTAAAAGCT 29473897
Query 176682 AGAACAGTAACCTGTGGCATAGTTACCTGTGTATGT-ACCTGGTTTCTGGCAGGGTTGTT 176740
|| ||||| |||| |||||| | || |||| ||| | ||| | | ||| ||
Sbjct 29473898 AGGACAGTTACCTATGGCATCCTCACAAGTGT-TGTCATTTGGGGTATTGCAATATTAGC 29473956
Query 176741 GTCCCTCCCTGAATTTTTCTTTCATGGACACCAAGATGACAATGGTAGGGTTCAGTGTGA 176800
|| || || | ||| | |||||| | ||| | || | | | | | | |
Sbjct 29473957 CTCTCTTCCAGGGTTTATATTTCATAGTGTTCAAAAGGAAGGTCCT-CGCTGGACTTGCA 29474015
Query 176801 TC-CTTACTACCCAGAGATGTCTACAAATGTTTGGAGGCGCGCCCACGTTGCAAAGGTGA 176859
| || | || ||| | | | ||| | ||||||| || || |||| |||
Sbjct 29474016 GCTCTCATTATCCATCAAATTATGAAAAAGAATGGAGGCAATTCCTGATTTTAAAGATGA 29474075
Query 176860 TTATGTTAAGTCTCATTTTGCCTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCA 176919
|| | | || | | || | |||||||| |||||||| | |||||| |
Sbjct 29474076 ACATCCTGGGACTTGTCATTCCATTTGTCATTATGATCTTCTGCTACATAGAAATTATAA 29474135
Query 176920 GAAGACTGTTGAGGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCA 176979
|| | | |||| || | |||| || | ||||| ||||||| || ||| ||
Sbjct 29474136 AAATATTACTGAGACGTAGGAATGAGAAAAAACATAAGGCAGTCAGGCTTATTTTTATCC 29474195
Query 176980 TCATGGTGGCCTATTTTGTTTTTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCT 177039
| ||| | | |||||| | || |||||||| |||||||||||| | || | | || |
Sbjct 29474196 TAATGATTGTTTATTTTATCTTCTGGACACCATACAACATTGTTGTTCTCATATACACGT 29474255
Query 177040 TTCACGCAACCCTT--CTTA---ACCTGCAGTGTGCATTGAGCAGTAACTTGGACATGGC 177094
|||| | | || | || ||||| | | || |||||| | |||| || ||
Sbjct 29474256 TTCAAGATTCATTTTCCCTAAATACCTG-TGAGGGC----AGCAGTCAGCTGGAGATAGC 29474310
Query 177095 TCTGCTGATAACAAAAACAGTAGCCTACACACACTGTTGCATCAACCCAGTGATCTACGC 177154
| | | ||| || | | || |||||||| |||||||| |||||||| ||
Sbjct 29474311 AATCCAAGTGACAGAAGCTATTGCAATGTTCCACTGTTGTATCAACCCTGTGATCTATGC 29474370
Query 177155 GTTCGTGGGGGAGAAGTTTAGAAGACACCTGTACCACTTCTTCCACACCTACGTGGCCAT 177214
|||| || || |||||||| | | | || || ||| ||||| | || | || ||
Sbjct 29474371 CTTCGCTGGTGAAAAGTTTAGGAAATATCTTTATACCTTTTTCCAAAAAGACATTGCAAT 29474430
Query 177215 CTACCTCTGCAA 177226
||||||||||||
Sbjct 29474431 CTACCTCTGCAA 29474442
Score = 89.7 bits (98), Expect = 6e-13
Identities = 234/351 (67%), Gaps = 12/351 (3%)
Strand=Plus/Minus
Query 176385 TTTGGGTTGTTGGGCAATATCTTAGTGGTGATTATTGTCATAAGATACATGAAGATCAAA 176444
||||| || |||||||| |||| ||| | || | |||| ||||| |||| | | |
Sbjct 29234169 TTTGGCCTGCTGGGCAATGCGCTAGTTGTGCTGATCCTGATAAAATACAAGAAGCTGAGA 29234110
Query 176445 AACCTCACTAACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACT 176504
| | | ||| |||| | ||| | || ||||||| || || ||||| ||| || | |
Sbjct 29234109 AGCATGACTGACATCTATCTGCTGAATCTGGCAATTTCCGATTTGCTTTTTATTCTTTCC 29234050
Query 176505 TTGCCATTTTGGATGCACTATATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTG 176564
||||||||||| |||| | | | ||||| ||| |||||| | | | ||
Sbjct 29234049 CTGCCATTTTGGGCTTACTACGTAGCA------CATGAATGGGATTTTGGAAATGCAATG 29233996
Query 176565 TGTAAACTGC--TCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCA 176622
|||||| | | |||||||| | | | | || | | || || | |||| ||| |
Sbjct 29233995 TGTAAAATTCTTTCAGGGGTCTATTATGC-TGGC-TTCTATAGTGGAATGTTTTTCATAA 29233938
Query 176623 TCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGCTTTGAGGTTTA 176682
| || | ||| |||| || ||||| || ||||| |||| || |||||| | | ||
Sbjct 29233937 TACTTTTGACAATAGATAGATATCTGGCCATTGTCCATGCAGTGTTTGCTTTAAAGGCTA 29233878
Query 176683 GAACAGTAACCTGTGGCATAGTTACCTGTGTATGT-ACCTGGTTTCTGGCA 176732
| ||||| |||| |||||| | || |||| ||| || ||| || | |||
Sbjct 29233877 GGACAGTTACCTATGGCATCCTCACAAGTGT-TGTCACTTGGGTTGTTGCA 29233828
Score = 89.7 bits (98), Expect = 6e-13
Identities = 234/351 (67%), Gaps = 12/351 (3%)
Strand=Plus/Minus
Query 9499 TTTGGGTTGTTGGGCAATATCTTAGTGGTGATTATTGTCATAAGATACATGAAGATCAAA 9558
||||| || |||||||| |||| ||| | || | |||| ||||| |||| | | |
Sbjct 29234169 TTTGGCCTGCTGGGCAATGCGCTAGTTGTGCTGATCCTGATAAAATACAAGAAGCTGAGA 29234110
Query 9559 AACCTCACTAACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACT 9618
| | | ||| |||| | ||| | || ||||||| || || ||||| ||| || | |
Sbjct 29234109 AGCATGACTGACATCTATCTGCTGAATCTGGCAATTTCCGATTTGCTTTTTATTCTTTCC 29234050
Query 9619 TTGCCATTTTGGATGCACTATATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTG 9678
||||||||||| |||| | | | ||||| ||| |||||| | | | ||
Sbjct 29234049 CTGCCATTTTGGGCTTACTACGTAGCA------CATGAATGGGATTTTGGAAATGCAATG 29233996
Query 9679 TGTAAACTGC--TCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCA 9736
|||||| | | |||||||| | | | | || | | || || | |||| ||| |
Sbjct 29233995 TGTAAAATTCTTTCAGGGGTCTATTATGC-TGGC-TTCTATAGTGGAATGTTTTTCATAA 29233938
Query 9737 TCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGCTTTGAGGTTTA 9796
| || | ||| |||| || ||||| || ||||| |||| || |||||| | | ||
Sbjct 29233937 TACTTTTGACAATAGATAGATATCTGGCCATTGTCCATGCAGTGTTTGCTTTAAAGGCTA 29233878
Query 9797 GAACAGTAACCTGTGGCATAGTTACCTGTGTATGT-ACCTGGTTTCTGGCA 9846
| ||||| |||| |||||| | || |||| ||| || ||| || | |||
Sbjct 29233877 GGACAGTTACCTATGGCATCCTCACAAGTGT-TGTCACTTGGGTTGTTGCA 29233828
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589497086423800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |