Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03- 31] 78,595 sequences; 2,365,766,571 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq99 105 8e-18 seq281 95.1 1e-14 >seq99 Length=4336708 Score = 105 bits (116), Expect = 8e-18 Identities = 116/153 (76%), Gaps = 5/153 (3%) Strand=Plus/Minus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGC-TCCTAGG 83449 |||||| || |||||||| || ||||| || ||||| ||||||| ||| | | | || Sbjct 2597383 CCTGGTAGCCAAACTGGTTGCAAGGGAAGCCCAGCACGACCAGCCGCCGCGGGTACCGGG 2597324 Query 83450 CGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCT 83509 | |||||||| ||| | ||| ||||| ||||| ||||| | ||||||||||| || Sbjct 2597323 C----CTGCAGCTGGTTGAGCTGGGTGTAATCCCGCACCGTCGTGCCTCAGAGGGATGCC 2597268 Query 83510 ACGTTCTCGATGAGCAAGACCCGGCCCCGTAAG 83542 |||||||| || | | ||||||||||| ||| Sbjct 2597267 ACGTTCTCAATCAAAACCACCCGGCCCCGGAAG 2597235 Score = 87.8 bits (96), Expect = 2e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 83056 GAGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCG 83115 ||| ||| || |||||||||||| | ||| | ||||||| | | ||||||| | Sbjct 2600201 GAGGAGGCGCTGGATGTCGGGCTCGATGGCAATGGTCTGGAACTTGGGGCTGTAGCGTTT 2600142 Query 83116 CACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCG 83175 | |||| || || | ||||||| |||||||||||||||||||| | ||||| ||| Sbjct 2600141 GAAGGGCTCCCCCTCGGGCCCCACCAGGAACTTCTCGAAGTTCCAGGAGAGGTCGTCGCG 2600082 Query 83176 GCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCA 83213 || ||| || ||| | | || || |||||||| || Sbjct 2600081 GCGCACGGGGCTCCACACGACGAACTTGGGGTCGCCCA 2600044 >seq281 Length=978875 Score = 95.1 bits (104), Expect = 1e-14 Identities = 112/147 (76%), Gaps = 5/147 (3%) Strand=Plus/Minus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 ||||||| ||||||||||| || ||||| | ||||| |||| |||| | | || || Sbjct 866093 CCTGGTGGCCGAACTGGTTGCAGGGGAAGGCCAGCACGGCCAG--CCCGGACCCATA-GC 866037 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 ||| |||||||||| | | ||| | | | |||||| ||||| | |||||||| ||||| | Sbjct 866036 GCCTCTGCAGCTCGCTGAGCTGGGCGAAGTCCCGGGCCGTGGTGCCTCAGAGCGACGCCA 865977 Query 83511 CGTT-CTCGATGAGCAAGACCCGGCCC 83536 |||| ||| | |||| || |||||| Sbjct 865976 CGTTGCTC-ACCAGCAGTACGCGGCCC 865951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608198695193800