Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03-
31] 78,595 sequences; 2,365,766,571 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq39 145 8e-30
seq78565 143 3e-29
>seq39
Length=8077485
Score = 145 bits (160), Expect = 8e-30
Identities = 169/228 (74%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || || || || || ||||| ||||||||| | || || || |||
Sbjct 4823374 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTAGAGGTTGAGCCCAGT 4823315
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | |||||| || || | |||||||| |||||||| | ||||||
Sbjct 4823314 GACACTATTGAGAATGTCAAGGCTAAGATCCAGGACAAAGAAGGCATCCCACCTGACCAG 4823255
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| | || |||| || ||||| |||||||| || | |||||||| |||||||||
Sbjct 4823254 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTATCTGACTACAAC 4823195
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
|||||||||||| ||||||| || || |||||||| ||||||| |||
Sbjct 4823194 ATCCAGAAGGAGTCCACGCTCCACCTTGTGTTGCGTCTGAGGGGTGGC 4823147
Score = 131 bits (144), Expect = 2e-25
Identities = 167/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
|| ||||| || || || || || || || ||||| ||||||||| | || || || ||
Sbjct 4823605 AACATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTAGAGGTTGAGCCC 4823546
Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806
| |||| | | | |||||| || || | |||||||| |||||||| | |||
Sbjct 4823545 AGTGACACTATTGAGAATGTCAAGGCTAAGATCCAGGACAAAGAAGGCATCCCACCTGAC 4823486
Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866
||||| | || |||| || ||||| |||||||| || | |||||||| ||||||
Sbjct 4823485 CAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTAC 4823426
Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
||||||||||||||| |||| || || || ||| |||| |||| || ||
Sbjct 4823425 AACATCCAGAAGGAGTCCACCCTCCACCTTGTGCTGCGTCTGAGAGGTGG 4823376
>seq78565
Length=14964121
Score = 143 bits (158), Expect = 3e-29
Identities = 163/219 (74%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
|||||||| || || || ||||| | |||||||||||||||||| | || || || ||
Sbjct 6183748 AAAATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTGGAAGTAGAGCCC 6183807
Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806
| ||||| | | | | |||||| ||||| | |||||||| ||||| || | |||
Sbjct 6183808 AGCGACACCATTGAGAATGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGAC 6183867
Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866
||||| | || |||| || || || |||||||| || | ||||||||| |||||||
Sbjct 6183868 CAGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTAC 6183927
Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905
||||||||||| || |||| ||||| | || |||||
Sbjct 6183928 AACATCCAGAAAGAATCCACTCTGCACTTGGTCCTGCGC 6183966
Score = 138 bits (152), Expect = 1e-27
Identities = 160/216 (74%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || ||||| | |||||||||||||||||| | || || || ||| |
Sbjct 6183979 ATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAAGTAGAGCCCAGC 6184038
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | |||||| ||||| | |||||||| ||||| || | ||||||
Sbjct 6184039 GACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCAGACCAG 6184098
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| | || |||| || || || |||||||| || | ||||||||| ||||||||||
Sbjct 6184099 CAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 6184158
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905
|||||||| || |||| ||||| | || |||||
Sbjct 6184159 ATCCAGAAAGAATCCACTCTGCACTTGGTCCTGCGC 6184194
Score = 132 bits (146), Expect = 5e-26
Identities = 159/216 (74%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || ||||| | |||||||||||||||||| | || || || ||| |
Sbjct 6184207 ATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAGGTAGAGCCCAGC 6184266
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | |||| | ||||| | |||||||| ||||| || | ||||||
Sbjct 6184267 GACACCATTGAGAATGTCAAAGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGACCAG 6184326
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| | || |||| || || || |||||||| || | ||||||||| ||||||||||
Sbjct 6184327 CAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 6184386
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905
|||||||| || |||| ||||| | || |||||
Sbjct 6184387 ATCCAGAAAGAATCCACTCTGCACTTGGTCCTGCGC 6184422
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 514713029337200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |