Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03- 31] 78,595 sequences; 2,365,766,571 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq78526 111 1e-19 >seq78526 Length=7101863 Score = 111 bits (122), Expect = 1e-19 Identities = 127/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 97117 GTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCT 97176 ||||||||||| |||||| | || | || |||||||| || || || ||||||||||| Sbjct 5468956 GTGACATGGGCAATCATATATGTGAGCAGTGAATAGCTGGCGATATTGAAAGGCACCCCC 5469015 Query 97177 AGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAA 97236 |||||||| || | ||||| ||||| ||||| || || || | |||| |||||| Sbjct 5469016 AGTCCCATGTCTCCAGATCTCTGATACAACTGGCAAGACAGTTCACCATTTAGAACATAA 5469075 Query 97237 AACTGACTCAATACATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAG 97287 ||||| | || | || || || ||||| ||||| || || ||||||| Sbjct 5469076 AACTGGCACAGAGCGTGGCATGGAGGCAAAACCATTAGTGAAATATCTAAG 5469126 Score = 87.8 bits (96), Expect = 1e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 97402 TATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCT 97461 ||||| |||||||| || ||||| ||||| ||||| || ||||| | || |||||| | Sbjct 5479910 TATTCAGCTCCAAAGTGTCTCCACTGGAAACCATACACTGGTCCCAAATCCCCTTCTGTT 5479969 Query 97462 CTATCACAGAAACCAAGCTTATCTAAATAGGACCTAGATCCATTTGCATCCCAAATGTGC 97521 || ||| |||||| | ||||| || | | |||||||| ||||||||||| | | Sbjct 5479970 CTGTCAGTGAAACCTTGTTTATCCAAGAATTCACGTGATCCATTGGCATCCCAAATCTTC 5480029 Query 97522 ACACCAGATGCTGCAAGCTCTTT 97544 || || ||| | |||||||| Sbjct 5480030 ACTCCTTTTGCAGAGAGCTCTTT 5480052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346451823734150