Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03- 31] 78,595 sequences; 2,365,766,571 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq78565 87.8 3e-12 >seq78565 Length=14964121 Score = 87.8 bits (96), Expect = 3e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| | || || | || |||||||| || || | || | || | | Sbjct 6183750 AATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTGGAAGTAGAGCCCAG 6183809 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| ||| | || ||||| ||||| |||||||| || || || || || Sbjct 6183810 CGACACCATTGAGAATGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGACCA 6183869 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||||| || ||||| ||||| || | || ||| | || || | || || || Sbjct 6183870 GCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAA 6183929 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || |||||||| ||| |||| ||||| | || | ||||||||||| Sbjct 6183930 CATCCAGAAAGAATCCACTCTGCACTTGGTCCTGCGCCTCCGAGGTGGTAT 6183980 Score = 86.0 bits (94), Expect = 9e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || | || |||||||| || || |||| | || | | Sbjct 6183979 ATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAAGTAGAGCCCAGC 6184038 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || ||||| || || |||||||| || || || || || Sbjct 6184039 GACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCAGACCAG 6184098 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||||| || ||||| ||||| || | || ||| | || || | || || || Sbjct 6184099 CAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 6184158 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || |||||||| ||| |||| ||||| | || | ||||||||||| Sbjct 6184159 ATCCAGAAAGAATCCACTCTGCACTTGGTCCTGCGCCTCCGAGGTGGTAT 6184208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 754713811696000