Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03- 31] 78,595 sequences; 2,365,766,571 total letters Query= NC_002229.3 Length=177874 Score E Sequences producing significant alignments: (Bits) Value seq78582 129 7e-25 >seq78582 Length=12947826 Score = 129 bits (142), Expect = 7e-25 Identities = 148/194 (76%), Gaps = 9/194 (5%) Strand=Plus/Plus Query 1930 AGGCCGCGGTCGGCCGGCACCCGCCATTGCCGCCGCGAAGAGTTCGCCTCTGTCAGCCTC 1989 ||||||||||| ||||| | ||||| ||| ||||||||||||||| ||||||||||||| Sbjct 1898295 AGGCCGCGGTCAGCCGGTTCGCGCCACTGCTGCCGCGAAGAGTTCGTCTCTGTCAGCCTC 1898354 Query 1990 GGCGGCGCCCGGGAGATGCGgcgcgcggccc-cgcg---cccccagcagagcaacacggg 2045 || |||| ||||| | | | ||| | ||| ||| | || | ||||||| ||| | Sbjct 1898355 GGGGGCGGCCGGG-GTGGAAGGGCGGGTCCCGGGCGGGTCGGCCGGGAGAGCAA-ACGTG 1898412 Query 2046 agcggcgcccccggggcaacccccgcgccccccTGCGCCGTGGGGCGCGCGGACGGCGTC 2105 || |||| |||| | |||| |||| | |||||| || ||||||| ||||| ||| | | Sbjct 1898413 AGTGGCGGCCCCTGCGCAA---CCGCCCTCCCCTGAGCTGTGGGGCCCGCGGTCGGGGCC 1898469 Query 2106 GCTCCCACACGCGC 2119 |||| || || ||| Sbjct 1898470 GCTCTCAGACACGC 1898483 Score = 129 bits (142), Expect = 7e-25 Identities = 148/194 (76%), Gaps = 9/194 (5%) Strand=Plus/Minus Query 139501 GCGCGTGTGGGAGCGACGCCGTCCGCGCGCCCCACGGCGCAggggggcgcgggggttgcc 139560 ||| || || ||||| | ||| ||||| ||||||| || |||||| | |||| |||| Sbjct 1898483 GCGTGTCTGAGAGCGGCCCCGACCGCGGGCCCCACAGCTCAGGGGAGGGCGG---TTGCG 1898427 Query 139561 ccgggggcgccgctcccgtgttgctctgctggggg---cgcg-gggccgcgcgcCGCATC 139616 | |||| |||| ||| ||| ||||||| | || | ||| ||| | ||| | | | Sbjct 1898426 CAGGGGCCGCCACTCACGT-TTGCTCTCCCGGCCGACCCGCCCGGGACCCGCCCTTCCAC 1898368 Query 139617 TCCCGGGCGCCGCCGAGGCTGACAGAGGCGAACTCTTCGCGGCGGCAATGGCGGGTGCCG 139676 ||||| |||| ||||||||||||||| ||||||||||||||| ||| ||||| | ||| Sbjct 1898367 -CCCGGCCGCCCCCGAGGCTGACAGAGACGAACTCTTCGCGGCAGCAGTGGCGCGAACCG 1898309 Query 139677 GCCGACCGCGGCCT 139690 || ||||||||||| Sbjct 1898308 GCTGACCGCGGCCT 1898295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 568509725470800