Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03- 31] 78,595 sequences; 2,365,766,571 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq78565 105 8e-18 seq36374 105 8e-18 seq76458 98.7 1e-15 seq32725 98.7 1e-15 seq78529 96.9 4e-15 seq2285 95.1 1e-14 seq925 95.1 1e-14 seq16958 91.5 2e-13 seq1106 91.5 2e-13 seq156 89.7 6e-13 seq81 87.8 2e-12 seq78530 82.4 9e-11 >seq78565 Length=14964121 Score = 105 bits (116), Expect = 8e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||||| |||| ||| || || || || ||||| || | ||| || ||| | Sbjct 6183965 CGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCA 6183906 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| || || || || || | ||||||||| | || | || || ||| Sbjct 6183905 TCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTG 6183846 Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148 || |||||| |||| || | | |||||||| | || || || | |||||| Sbjct 6183845 TCTTGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACTTCCAGGGTGATG 6183786 Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 ||||||||||| | || || |||||||| |||||||| Sbjct 6183785 GTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCATTTT 6183748 Score = 104 bits (114), Expect = 3e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||||| |||| ||| || || || || ||||| || | ||| || ||| | Sbjct 6184193 CGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCA 6184134 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| || || || || || | ||||||||| | || | || || ||| Sbjct 6184133 TCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTG 6184074 Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148 ||| |||||| |||| || | | |||||||| | || || || | |||||| Sbjct 6184073 TCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACTTCTAGGGTGATG 6184014 Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||||||||| | || || |||||||| ||||| Sbjct 6184013 GTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 6183979 Score = 104 bits (114), Expect = 3e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||||| |||| ||| || || || || ||||| || | ||| || ||| | Sbjct 6184421 CGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCA 6184362 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| || || || || || | ||||||||| | || | || || ||| Sbjct 6184361 TCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTG 6184302 Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148 || |||||| ||||| || | | |||||||| | || || || | |||||| Sbjct 6184301 TCTTGGATTTTGGCTTTGACATTCTCAATGGTGTCGCTGGGCTCTACCTCTAGGGTGATG 6184242 Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||||||||| | || || |||||||| ||||| Sbjct 6184241 GTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 6184207 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 6172514 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 6172455 Query 60126 TACTACCGAGGAT 60138 ||||| ||||||| Sbjct 6172454 TACTAACGAGGAT 6172442 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 6176873 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 6176814 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 6176813 TACTAACGAGGA 6176802 >seq36374 Length=840 Score = 105 bits (116), Expect = 8e-18 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || ||||||||||||||||||||||||||||||||||||| |||||| ||||| Sbjct 262 TCTCCCCGTCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGGGATACTCCCCACT 203 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 202 ATACTAACGAGGA 190 >seq76458 Length=506 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 186 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 127 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 126 TACTAACGAGGA 115 >seq32725 Length=905 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 320 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 379 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 380 TACTAACGAGGA 391 >seq78529 Length=6346059 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 1850392 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 1850333 Query 60126 TACTACCGAGGAT 60138 ||||| ||||||| Sbjct 1850332 TACTAACGAGGAT 1850320 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 3554879 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 3554938 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 3554939 TACTAACGAGGA 3554950 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 3554700 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 3554641 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 3554640 TACTAACGAGGA 3554629 >seq2285 Length=18801 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||| ||||||||||||| ||||||||||||| Sbjct 18643 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCTGCGTGACAGGCGGGGATACTCACCACTA 18702 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 18703 TACTAACGAGGA 18714 >seq925 Length=74835 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| |||||||||| |||||||||| ||||||||||||| Sbjct 60751 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCTTGACAGGCGGGGATACTCACCACTA 60692 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 60691 TACTAACGAGGA 60680 >seq16958 Length=887 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||||||||||||||||||| |||||||||| | |||||||||||| Sbjct 262 TCTCCCCGTCGGGGAATCGAACCCTGGTCTCCCACGTGACAGGCAGGGATACTCACCACT 203 Query 60125 ATACTACCGAGGA 60137 |||||| | |||| Sbjct 202 ATACTAACAAGGA 190 >seq1106 Length=51910 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||||||||||||||||||| |||||||||| | |||||||||||| Sbjct 4522 TCTCCCCGTCGGGGAATCGAACCCTGGTCTCCCACGTGACAGGCAGGGATACTCACCACT 4581 Query 60125 ATACTACCGAGGA 60137 |||||| | |||| Sbjct 4582 ATACTAACAAGGA 4594 >seq156 Length=2469232 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||| | ||||||||||| ||||||||||||| Sbjct 2369061 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCTGTGTGACAGGCGGGGATACTCACCACTA 2369002 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 2369001 TACTAACGAGGA 2368990 >seq81 Length=4821437 Score = 87.8 bits (96), Expect = 2e-12 Identities = 56/61 (92%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 60076 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAG 60135 |||||||||||||||||||||||||||||||| || |||||||||||||||||| ||| Sbjct 917668 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGTGGGGATACTCACCACTATACTAATGAG 917727 Query 60136 G 60136 | Sbjct 917728 G 917728 >seq78530 Length=11260263 Score = 82.4 bits (90), Expect = 9e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 60076 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAG 60135 ||||||||||||| ||||||||||||||||| || ||||| |||||||||||| |||| Sbjct 2848792 GGGAATCGAACCCCAGTCTCCCGCGTGACAGGTGGGGATACTTACCACTATACTAACGAG 2848851 Query 60136 GAT 60138 ||| Sbjct 2848852 GAT 2848854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571255824946600