Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03-
31] 78,595 sequences; 2,365,766,571 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq78565 105 8e-18
seq36374 105 8e-18
seq76458 98.7 1e-15
seq32725 98.7 1e-15
seq78529 96.9 4e-15
seq2285 95.1 1e-14
seq925 95.1 1e-14
seq16958 91.5 2e-13
seq1106 91.5 2e-13
seq156 89.7 6e-13
seq81 87.8 2e-12
seq78530 82.4 9e-11
>seq78565
Length=14964121
Score = 105 bits (116), Expect = 8e-18
Identities = 154/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028
|||| ||||| |||| ||| || || || || ||||| || | ||| || ||| |
Sbjct 6183965 CGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCA 6183906
Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088
|| || |||||||| || || || || || | ||||||||| | || | || || |||
Sbjct 6183905 TCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTG 6183846
Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148
|| |||||| |||| || | | |||||||| | || || || | ||||||
Sbjct 6183845 TCTTGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACTTCCAGGGTGATG 6183786
Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186
||||||||||| | || || |||||||| ||||||||
Sbjct 6183785 GTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCATTTT 6183748
Score = 104 bits (114), Expect = 3e-17
Identities = 152/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028
|||| ||||| |||| ||| || || || || ||||| || | ||| || ||| |
Sbjct 6184193 CGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCA 6184134
Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088
|| || |||||||| || || || || || | ||||||||| | || | || || |||
Sbjct 6184133 TCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTG 6184074
Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148
||| |||||| |||| || | | |||||||| | || || || | ||||||
Sbjct 6184073 TCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACTTCTAGGGTGATG 6184014
Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
||||||||||| | || || |||||||| |||||
Sbjct 6184013 GTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 6183979
Score = 104 bits (114), Expect = 3e-17
Identities = 152/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028
|||| ||||| |||| ||| || || || || ||||| || | ||| || ||| |
Sbjct 6184421 CGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCA 6184362
Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088
|| || |||||||| || || || || || | ||||||||| | || | || || |||
Sbjct 6184361 TCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTG 6184302
Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148
|| |||||| ||||| || | | |||||||| | || || || | ||||||
Sbjct 6184301 TCTTGGATTTTGGCTTTGACATTCTCAATGGTGTCGCTGGGCTCTACCTCTAGGGTGATG 6184242
Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
||||||||||| | || || |||||||| |||||
Sbjct 6184241 GTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 6184207
Score = 96.9 bits (106), Expect = 4e-15
Identities = 65/73 (89%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 6172514 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 6172455
Query 60126 TACTACCGAGGAT 60138
||||| |||||||
Sbjct 6172454 TACTAACGAGGAT 6172442
Score = 95.1 bits (104), Expect = 1e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 6176873 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 6176814
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 6176813 TACTAACGAGGA 6176802
>seq36374
Length=840
Score = 105 bits (116), Expect = 8e-18
Identities = 67/73 (92%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || ||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 262 TCTCCCCGTCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGGGATACTCCCCACT 203
Query 60125 ATACTACCGAGGA 60137
|||||| ||||||
Sbjct 202 ATACTAACGAGGA 190
>seq76458
Length=506
Score = 98.7 bits (108), Expect = 1e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 186 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 127
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 126 TACTAACGAGGA 115
>seq32725
Length=905
Score = 98.7 bits (108), Expect = 1e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 320 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 379
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 380 TACTAACGAGGA 391
>seq78529
Length=6346059
Score = 96.9 bits (106), Expect = 4e-15
Identities = 65/73 (89%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 1850392 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 1850333
Query 60126 TACTACCGAGGAT 60138
||||| |||||||
Sbjct 1850332 TACTAACGAGGAT 1850320
Score = 95.1 bits (104), Expect = 1e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 3554879 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 3554938
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 3554939 TACTAACGAGGA 3554950
Score = 89.7 bits (98), Expect = 6e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 3554700 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 3554641
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 3554640 TACTAACGAGGA 3554629
>seq2285
Length=18801
Score = 95.1 bits (104), Expect = 1e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||| ||||||||||||| |||||||||||||
Sbjct 18643 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCTGCGTGACAGGCGGGGATACTCACCACTA 18702
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 18703 TACTAACGAGGA 18714
>seq925
Length=74835
Score = 95.1 bits (104), Expect = 1e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| |||||||||| |||||||||| |||||||||||||
Sbjct 60751 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCTTGACAGGCGGGGATACTCACCACTA 60692
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 60691 TACTAACGAGGA 60680
>seq16958
Length=887
Score = 91.5 bits (100), Expect = 2e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | |||||||||||||||||||||| |||||||||| | ||||||||||||
Sbjct 262 TCTCCCCGTCGGGGAATCGAACCCTGGTCTCCCACGTGACAGGCAGGGATACTCACCACT 203
Query 60125 ATACTACCGAGGA 60137
|||||| | ||||
Sbjct 202 ATACTAACAAGGA 190
>seq1106
Length=51910
Score = 91.5 bits (100), Expect = 2e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | |||||||||||||||||||||| |||||||||| | ||||||||||||
Sbjct 4522 TCTCCCCGTCGGGGAATCGAACCCTGGTCTCCCACGTGACAGGCAGGGATACTCACCACT 4581
Query 60125 ATACTACCGAGGA 60137
|||||| | ||||
Sbjct 4582 ATACTAACAAGGA 4594
>seq156
Length=2469232
Score = 89.7 bits (98), Expect = 6e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||| | ||||||||||| |||||||||||||
Sbjct 2369061 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCTGTGTGACAGGCGGGGATACTCACCACTA 2369002
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 2369001 TACTAACGAGGA 2368990
>seq81
Length=4821437
Score = 87.8 bits (96), Expect = 2e-12
Identities = 56/61 (92%), Gaps = 0/61 (0%)
Strand=Plus/Plus
Query 60076 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAG 60135
|||||||||||||||||||||||||||||||| || |||||||||||||||||| |||
Sbjct 917668 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGTGGGGATACTCACCACTATACTAATGAG 917727
Query 60136 G 60136
|
Sbjct 917728 G 917728
>seq78530
Length=11260263
Score = 82.4 bits (90), Expect = 9e-11
Identities = 56/63 (89%), Gaps = 0/63 (0%)
Strand=Plus/Plus
Query 60076 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAG 60135
||||||||||||| ||||||||||||||||| || ||||| |||||||||||| ||||
Sbjct 2848792 GGGAATCGAACCCCAGTCTCCCGCGTGACAGGTGGGGATACTTACCACTATACTAACGAG 2848851
Query 60136 GAT 60138
|||
Sbjct 2848852 GAT 2848854
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571255824946600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |