Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03- 31] 78,595 sequences; 2,365,766,571 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq78565 113 3e-20 seq39 98.7 6e-16 >seq78565 Length=14964121 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || | ||| |||| ||| | ||| ||||||||| ||||||||||||||| Sbjct 6183977 CCACCTCGGAGGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGAC 6183918 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || |||| |||||| || || || || |||| ||||||||| || Sbjct 6183917 AGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGA 6183858 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || || ||||| || || ||| | || | || | ||| | | || || Sbjct 6183857 ATGCCTTCTTTGTCTTGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACT 6183798 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||||||||| || | |||||||||||||||||||| Sbjct 6183797 TCCAGGGTGATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 6183751 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || | ||| |||| ||| | ||| ||||||||| ||||||||||||||| Sbjct 6184205 CCACCTCGGAGGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGAC 6184146 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || |||| |||||| || || || || |||| ||||||||| || Sbjct 6184145 AGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGA 6184086 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTG--CTTTAGATCGGCTATCGAATCGGTCGATTCGA 34340 | || || ||||| || ||||| ||| | || | || | ||| | | || | Sbjct 6184085 ATGCCTTCTTTGTC--CTGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTA 6184028 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | || | |||||||||||||| || | |||||||||||||||||||| Sbjct 6184027 CTTCTAGGGTGATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 6183979 Score = 111 bits (122), Expect = 1e-19 Identities = 161/225 (72%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 34166 CCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGC 34225 || || || | ||| |||| ||| | ||| ||||||||| ||||||||||||||||| Sbjct 6184430 CCTCGGAGGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGG 6184371 Query 34226 TGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACG 34285 || | || |||| |||||| || || || || |||| ||||||||| || | | Sbjct 6184370 GTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATG 6184311 Query 34286 CTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTC 34344 | || ||||| || ||| ||||| | || | || | ||| | | || || || Sbjct 6184310 CCTTCTTTGTCTTGGAT-TTTGGCTTTGACATTCTCAATGGTGTCGCTGGGCTCTACCTC 6184252 Query 34345 CACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | |||||||||||||| || | |||||||||||||||||||| Sbjct 6184251 TAGGGTGATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 6184207 >seq39 Length=8077485 Score = 98.7 bits (108), Expect = 6e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || | ||| | |||||| ||||| | || || ||||| ||||||||||| ||| Sbjct 4823376 CCACCTCTCAGACGCAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 4823435 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || |||| ||||||||| || || || |||| ||||||||| || Sbjct 4823436 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGTGGG 4823495 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || || ||||| ||||| ||| | || | || | || | | || || Sbjct 4823496 ATGCCTTCTTTGTCCTGGATCTTAGCCTTGACATTCTCAATAGTGTCACTGGGCTCAACC 4823555 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| ||||| || || || ||||||||||||||||| Sbjct 4823556 TCTAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 4823602 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || | ||| | || ||| ||||| | || || ||||| ||||||||||| || Sbjct 4823148 CCACCCCTCAGACGCAACACAAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCAGAT 4823207 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || |||| ||||||||| || || || |||| ||||||||| || Sbjct 4823208 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGTGGG 4823267 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || || ||||| ||||| ||| | || | || | || | | || || Sbjct 4823268 ATGCCTTCTTTGTCCTGGATCTTAGCCTTGACATTCTCAATAGTGTCACTGGGCTCAACC 4823327 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| ||||| || || || ||||||||||||||||| Sbjct 4823328 TCTAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 4823374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322762536903200