Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03- 31] 78,595 sequences; 2,365,766,571 total letters Query= NC_002641.1 Length=159160 Score E Sequences producing significant alignments: (Bits) Value seq119 145 8e-30 >seq119 Length=3317459 Score = 145 bits (160), Expect = 8e-30 Identities = 282/417 (68%), Gaps = 9/417 (2%) Strand=Plus/Plus Query 125104 CTTACCCATCCGCCGTGCTCCCGCAACCACTCGCCCTGCTCTTCGGCCAGGTACGCGGCC 125163 |||||||| ||||||||| || || |||||||| || ||| ||||||||||| | |||| Sbjct 879397 CTTACCCAGCCGCCGTGCGCCTCCAGCCACTCGCGCTTCTCCTCGGCCAGGTAGGAGGCC 879456 Query 125164 AGCGCTGCGGCCAAGCGGCTTGGCCCTTCCTCACAGCCGTTTTCGTACAGCGCCGTTGCC 125223 ||| | |||||||||||| | | | ||| | ||| | ||| |||||||| ||| Sbjct 879457 AGCACCTCGGCCAAGCGGCCCGCCTCCTCCCGGCTGCCCTGCTCGGCCAGCGCCGCCGCC 879516 Query 125224 AGCGAGCCGCCGAGGACTATGGTCGCCAGGCATCGACCCCAGTTGAAGCCGCTTCCGGAG 125283 || || ||| || | |||||| ||| |||||||| | ||||| | | Sbjct 879517 AGGCTCCCCGCGAACACCACCAGCGCCAGCACTCGGCCCCAGTTCAGGCCGCCCTCCGCC 879576 Query 125284 TTCA---ATTCAGACACCACACTTTGCAGCGCCGACAACGCTGCCTGCGTGCCGCCGCTC 125340 | || || | |||| || ||||||||| | ||| || ||| || | Sbjct 879577 TCCAGCTGCTCCGCCACCCGGCTCAGCAGCGCCGCC--GGCTCCCGGCG-CTCGTCCAGG 879633 Query 125341 GCTAACGGCGCGCAGGAGCGAAAGAAGGGCCTCTCTCGCCGCTCCAGCTCGGCCGCCGCT 125400 || | ||| ||||| ||| |||||||||| ||| || | |||||||||| ||||| Sbjct 879634 GCCAGCGGGCGGCAGGCGCGGAAGAAGGGCCGCTCCCGGCTCTCCAGCTCGCTGGCCGCC 879693 Query 125401 CGCCGNNNNNNNNNNNNNGTAGGACTCGGCGGCGGCCCTTCCTTGCCGC---AGCAGTGC 125457 ||||| | || || ||||||||| || ||| | || |||| Sbjct 879694 CGCCGCAGCGTCTCGGCCGCGGGGCTGGGCGGCGGCAGCGCCGGGCCCCCCAGGCGGTGC 879753 Query 125458 TGGAAGTAATCCTCCAGCAGCAACGCCGTTTCTTCCTTCAGGGAGTCAGCCATGGCT 125514 ||||||||||| ||||||||| |||||| | |||||||| ||| | | ||||||| Sbjct 879754 TGGAAGTAATCGCCCAGCAGCAGCGCCGTCTGCTCCTTCAGCGAGCCCGGCATGGCT 879810 Score = 140 bits (154), Expect = 3e-28 Identities = 283/418 (68%), Gaps = 11/418 (3%) Strand=Plus/Minus Query 157082 AGCCATGGCTGACTCCCTGAAGGAAGAAACGGCGTTGCTGCTGGAGGATTACTTCCAGCA 157141 ||||||| | | ||| |||||||| | |||||| ||||||||| |||||||||||||| Sbjct 879810 AGCCATGCCGGGCTCGCTGAAGGAGCAGACGGCGCTGCTGCTGGGCGATTACTTCCAGCA 879751 Query 157142 CTGCT---GCGGCAAGGAAGGGCCGCCGCCGAGTCCTACGGCGGCAGA-GCTGCGGCGAG 157197 | || | ||| || ||||||||| || || |||| | ||| ||||||||| | Sbjct 879750 CCGCCTGGGGGGCCCGGCGCTGCCGCCGCCCAGCCCCGCGGCCG-AGACGCTGCGGCGGG 879692 Query 157198 CNNNNNNNNNNNNNGAGCGGCGAGAGAGGCCCTTCTTTCGCTCCTGCGCGCCGTTAGCGA 157257 | ||| | || ||| |||||||||| ||| ||||| ||| | || Sbjct 879691 CGGCCAGCGAGCTGGAGAGCCGGGAGCGGCCCTTCTTCCGCGCCTGCCGCCCGCTGGCCC 879632 Query 157258 GCGGCGGCACGCAGGCAGCGTTGTCGGCGCTGCAAAGTGTGGTGTCTGAAT---TGAACT 157314 | || ||| || ||| | ||||||||| || |||| | || || | Sbjct 879631 TGGACGAG-CGCCGGGAGCC--GGCGGCGCTGCTGAGCCGGGTGGCGGAGCAGCTGGAGG 879575 Query 157315 CCGGAAGCGGCTTCAACTGGGGTCGATGCCTGGCGACCATAGTCCTCGGCGGCTCGCTGG 157374 | | ||||| | |||||||| ||| |||||| | || ||| || |||| Sbjct 879574 CGGAGGGCGGCCTGAACTGGGGCCGAGTGCTGGCGCTGGTGGTGTTCGCGGGGAGCCTGG 879515 Query 157375 CAACGGCGCTGTACGAAAACGGCTGTGAGGAAGGGCCAAGCCGCTTGGCCGCAGCGCTGG 157434 | |||||||| ||| | ||| | ||| | | | |||||||||||| | ||||| Sbjct 879514 CGGCGGCGCTGGCCGAGCAGGGCAGCCGGGAGGAGGCGGGCCGCTTGGCCGAGGTGCTGG 879455 Query 157435 CCGCGTACCTGGCCGAAGAGCAGGGCGAGTGGTTGCGGGAGCACGGCGGATGGGTAAG 157492 || | ||||||||||| ||| || |||||||| || || ||||||||| |||||||| Sbjct 879454 CCTCCTACCTGGCCGAGGAGAAGCGCGAGTGGCTGGAGGCGCACGGCGGCTGGGTAAG 879397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 508683758544000