Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03- 31] 78,595 sequences; 2,365,766,571 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq135 105 6e-18 seq78549 86.0 6e-12 >seq135 Length=2957239 Score = 105 bits (116), Expect = 6e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 15886 TTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTTT 15945 ||| ||||| ||| || | || ||||| ||| || | | || |||||||| | Sbjct 2821268 TTAGAAATCTGCATCCAGTGTGAAAACATTGTCTGTTGTTTCTGCCATAACTGCAAAGCG 2821209 Query 15946 TTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTC 16005 ||||| || ||| | ||| ||||||||||||||||||||||| | ||||||||| || Sbjct 2821208 CTGATACTCTGAAACCCGCTTCTCAAAGAAATTTGTTTTTCCTTCCAGTGAAATATTCTC 2821149 Query 16006 CATAAAATCAAAAGGATTTTTTG 16028 ||| |||||||||||||||| || Sbjct 2821148 CATGAAATCAAAAGGATTTTCTG 2821126 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 16268 CTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAAT 16327 || || | ||| || || ||||| || || ||||| || || | || || | |||||| Sbjct 2809025 CTAATGAGCTCATTGGAGAATGTCAGTCCAGGCATCAGACCCCTCTTCTTCAGCCAAAAA 2808966 Query 16328 ATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGC 16387 ||||| ||||| ||||| || ||||| || ||||| ||||||||||| ||||||| || | Sbjct 2808965 ATAGCAGCAAAAGAACCTGAGAAGAAGATCCCTTCCACTGCGGCAAAGGCAACCACTCTC 2808906 Query 16388 TCACC 16392 || || Sbjct 2808905 TCCCC 2808901 >seq78549 Length=11360908 Score = 86.0 bits (94), Expect = 6e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 16498 ATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGC 16557 |||| ||| ||||||||||| || | ||| |||||||||||||| || || ||||| || Sbjct 7631698 ATCTTTAATGTAAGTATCTATGAGCAGACTGTACATTTCTGAATGTATGTTTTCCATAGC 7631757 Query 16558 TATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC 16602 ||||| || ||||| || || | ||||| | || |||||||| Sbjct 7631758 AATCTGGAAGCCATAGAAACAGCGTGCTTCTGTTACCTGTACTTC 7631802 Score = 82.4 bits (90), Expect = 7e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 15926 TTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTT 15985 |||||||||||| ||| || || ||||| | |||| ||| |||||||| || || || Sbjct 7626601 TTTGACATAACTCCCATCTTCTGGTATTCTCCTACTCGCTTCTCAAAGAAGTTAGTCTTG 7626660 Query 15986 CCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATT 16023 ||||| | || ||||| |||||||| ||||| ||||| Sbjct 7626661 CCTTCCAGCGAGATATTCTCCATAAAGTCAAATGGATT 7626698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462057610867000