Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03- 31] 78,595 sequences; 2,365,766,571 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq78569 376 2e-99 seq30 127 1e-24 >seq78569 Length=9971662 Score = 376 bits (416), Expect = 2e-99 Identities = 692/1012 (68%), Gaps = 2/1012 (0%) Strand=Plus/Plus Query 107626 ATTACCTCAACATAACCAGAGACTGTGAGCGCTTCAAGGCCCAAAGGAAGTTCATACAGT 107685 ||||| | ||| | || | ||||| | |||||| || | |||| ||| | ||| Sbjct 6848715 ATTACGTGAACTTGACTAAGGACTGCACTCACTTCAAAGCGCGCAGGAGGTTTGTTGAGT 6848774 Query 107686 TCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGA 107745 ||||||| || ||||| ||| ||| || || ||||| || || ||||| || ||||||| Sbjct 6848775 TCCCACTAAGCAAAGAGGAGGAAGATTTTCCTATTGCATATTCCATGGTAGTGCATGAGA 6848834 Query 107746 AGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTG 107805 ||||||| | || ||| | || | | || | || | || ||||| |||||||||| Sbjct 6848835 AGATTGAGATGTTCGAAAGATTGTTAAGGTCCATCTACACGCCCCAGAATATATACTGTG 6848894 Query 107806 TCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCT 107865 ||||||| ||| |||| ||||| || ||||| ||||| ||| | || |||| Sbjct 6848895 TCCACGTAGATCTGAAATCCCCGGACGAATTCAAGGAGGCAGTCCGAGGGATCGCCTCCT 6848954 Query 107866 GCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCA 107925 ||||| |||||||| |||||| ||| ||| || || || || ||||||||| Sbjct 6848955 GCTTCGAAAATGTCTTTGTGGCCACTAAACTGGAGAGAGTAGTGTACGCATCCTGGTCCC 6849014 Query 107926 GAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGT 107985 | || ||||| ||||||||||| ||||| || | ||| ||||| ||||| |||| || Sbjct 6849015 GGGTCCAAGCGGACCTGAACTGCATGGAGGAGCTACTCAAGAGCAACGTGCCCTGGAGGT 6849074 Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGG 108045 | | | || || ||||| || || |||||||| || || || |||||||| |||| Sbjct 6849075 ATCTCTTAAACACTTGCGGCACCGATTTCCCCATCAAAACTAACGCCGAGATTGTCCGAA 6849134 Query 108046 CCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaa 108105 |||| ||| | | || || || |||| |||||| |||||| ||| || | ||| Sbjct 6849135 CCCTGAAGTTTCTAAATGGGAAAAACAATATGGAATCTGAGAAACCCTCGTCGATCAAGG 6849194 Query 108106 aaaaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAAGATGA 108165 ||||||||| |||| | | | ||| || | || || ||| || | || Sbjct 6849195 CGGCTCGCTGGAAGTACCACCACCACGTGGAGAACTCGGTGATCCGAACCGCCACGGAGA 6849254 Query 108166 AGGACCCTCCC-CCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCT 108224 | || |||||| || || | |||||||||||| || ||||||||| |||||| | | Sbjct 6849255 A-GAGCCTCCCGCCCCATGGCTCACCCATGTTCACGGGCAATGCCTATGTTGTGGTCACA 6849313 Query 108225 CGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTC 108284 | | |||||| ||| |||| || ||||| | | || | ||| | || ||| Sbjct 6849314 AGGGACTTTGTTCAAGCCCTCTTTGAAAACCCGACGGCGCAGCGGCTGCTGGAGTGGTCA 6849373 Query 108285 AAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGATG 108344 ||||| || || ||||| || ||| | | ||||||||||| || || || | ||| Sbjct 6849374 AAAGATACTTACAGCCCAGATGAATATATTTGGGCCACCCTCCACCGGATGCCAGGCATG 6849433 Query 108345 CCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGG 108404 || || || || ||| || |||||| | |||| || | | ||| | || || Sbjct 6849434 CCAGGATCGGTGCCTTATAACGATAAGTATGAGGTCTCTGATGTCAATGCTGTTGCTAGA 6849493 Query 108405 CTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTGC 108464 | || |||||| |||| ||||| |||||||||| ||||| || || | || || Sbjct 6849494 TTGGTGAAGTGGTCCTACCTGGAGGGCGATGTCAGCAAAGGGGCACCCTACCCTCCGTGT 6849553 Query 108465 TCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTC 108524 | || ||| | ||||| |||| | || |||| || || || ||||||| ||| Sbjct 6849554 ACGGGTGCCCACCAACGGGCCGTCTGTGTGTATGGGGTAGGTGATCTTCACTGGATGCTC 6849613 Query 108525 CAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAACGTCCTGCAG 108584 || |||||||| || | || |||||||||||||| | || ||||| |||| | ||| Sbjct 6849614 CAAAACCATCATCTGCTAGCCAACAAGTTTGACCCAAATGTAGATGAAAACGCAATCCAG 6849673 Query 108585 TGCTTAGAAGAGTACCTACGTCATAAGGCCATCTATGGGACTGAACTTTGAG 108636 || | || || || |||||| | ||| | | || |||| || || |||| Sbjct 6849674 TGTCTGGAGGAATATCTACGTTACAAGTCAGTGTACGGGAGAGATCTCTGAG 6849725 >seq30 Length=9398747 Score = 127 bits (140), Expect = 1e-24 Identities = 571/889 (64%), Gaps = 37/889 (4%) Strand=Plus/Minus Query 107688 CCACTGAGTAAAGAAG-AGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAA 107746 || || |||||||||| |||| || || || |||||||| || || ||||| || | || Sbjct 5820364 CCTCTCAGTAAAGAAGAAGCTGGA-TTTCCAATTGCCTATTCAATAGTGGTATATCACAA 5820306 Query 107747 GATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGT 107806 || || | |||| | || || || | | ||||| |||||||| ||||| | Sbjct 5820305 AATAGACATGCTTGATAGACTTCTAAGATCAATCTATGCTCCTCAGAATTATTACTGCAT 5820246 Query 107807 CCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTG 107866 || || || ||||| ||||| |||| | || || |||| ||| | ||||| Sbjct 5820245 TCATGTTGACAAAAAGTCTCCAGAATCTTTTCTGGCAGCAGTTAAGGGAATTGTGTCCTG 5820186 Query 107867 CTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAG 107926 ||| |||||||| || ||||| | |||| || || ||||| || ||| ||| Sbjct 5820185 TTTCAATAATGTCTTTATTGCCAGCCAATTGGAGAGTGTAGTGTATGCTTCGTGGAGCAG 5820126 Query 107927 AGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAAG 107984 || || || ||||| ||||| ||| |||| | || ||| | ||| | | ||||| Sbjct 5820125 GGTACAGGCAGACCTCAACTGCATGAAAGA-TCTCTACAG-GAGAAGTACAAACTGGAAA 5820068 Query 107985 TACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTG 108044 || || | ||| || || | ||||| || || |||||||| || ||||| | Sbjct 5820067 TATTTGATAAATCTTTGTGGTATGGACTTTCCTATTAAGACCAACCAGGAAATGGTGGAG 5820008 Query 108045 GCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAG---GTACCTTCTGAGTCC 108101 | || | |||||| | ||||| | || ||||| | ||||| || | Sbjct 5820007 AAATTGAAAGCCCTAAAGGGTGAAAACAGCTTAGAAACTGAGAAAATGCCTTC-CAG--C 5819951 Query 108102 aaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAAG 108161 ||| ||| || |||||| | | |||||| | | | ||| ||| | || Sbjct 5819950 AAAGAAATACGATGGAAAAAACACTATGAAATTGTTG----ATGGTAAGCTA--AAGAAC 5819897 Query 108162 ATG---------AAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTAT 108212 ||| || | ||||| ||| || | ||| | ||| | || | ||||||| Sbjct 5819896 ATGGGAATAGACAAACAACCTCCACCTCTTAGTACACCTGTTTTCTCTGGCAGTGCCTAT 5819837 Query 108213 TTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAAC-CCTAAATCCCAAAGACT 108271 ||||| || | | ||||| | |||| |||||||| | |||||| | | | Sbjct 5819836 TTTGTTGCTAGTAGGAGTTTTGTAGAGTATGTGCTAGACAACAGCAAAATCCTTGA-ATT 5819778 Query 108272 GGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCG 108331 ||||||||| |||||||| |||||||| || ||| || | ||||| || |||| | Sbjct 5819777 TATTGAATGGGCTAAAGACACTTATAGCCCTGATGAATACTTGTGGGCTACTATTCAAAG 5819718 Query 108332 TGCTCCGTGGA-TGCCTGGCTCTGT---TCCTAGCCACCCCAAGTATCACATCTCAGACA 108387 ||| || | | || || | || | |||| | ||||||| | | || |||| Sbjct 5819717 -AATCCCTGAAGTCCCAGGGGCAGTTTCTTCTAGTGA---CAAGTATGATGTTTCTGACA 5819662 Query 108388 TGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGG 108447 ||| ||| | |||||| | || |||||||| || || || ||||| | || | Sbjct 5819661 TGAATGCTCTTGCCAGGTTTGTGAAGTGGCATTATTTTGAAGGGGATGTTTCAAAAGGTG 5819602 Query 108448 CGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGG 108507 | || ||| | || ||| |||||| ||| | | | | || | | || | || | Sbjct 5819601 CCCCCTATCCTCCGTGCAATGGAATTCATGTGCGCTCTGTGTGTGTGTTTGGTGTGGGAG 5819542 Query 108508 ACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGA 108556 || || ||||||| | ||||| || ||||| || || ||||||||||| Sbjct 5819541 ACTTGAACTGGATGTTACAGAAACACCACCTATTTGCCAACAAGTTTGA 5819493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347935201479030