Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03- 31] 78,595 sequences; 2,365,766,571 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq78526 125 6e-24 >seq78526 Length=7101863 Score = 125 bits (138), Expect = 6e-24 Identities = 123/159 (77%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 20399 TAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATGAATTGT 20458 |||||| |||||||||||| || || ||||| ||||| ||| ||| |||| ||| Sbjct 5469112 TAATGGTTTTGCCTCCATGCCACGCTCTGTGCCAGTTTTATGTTCTAAATGGTGAACTGT 5469053 Query 20459 CGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCAA 20518 | || || ||||||| |||| | || ||||||||||| || ||||||||||| || | Sbjct 5469052 CTTGCCAGTTGTATCAGAGATCTGGAGACATGGGACTGGGGGTGCCTTTCAATATCGCCA 5468993 Query 20519 GTTATGCGCTGCTTACGTATATGATTGCACATGTTACAG 20557 | ||| | ||||| || ||||||||||| ||||| |||| Sbjct 5468992 GCTATTCACTGCTCACATATATGATTGCCCATGTCACAG 5468954 Score = 87.8 bits (96), Expect = 1e-12 Identities = 126/175 (72%), Gaps = 2/175 (1%) Strand=Plus/Minus Query 20113 GGATCAACAAATTCTACCGAGCTTGTAGAAAAAGGAGTTAAGATTTGGAGCGCACATGGA 20172 || ||||||||| ||| ||||| | ||||||||| ||||||||| || ||||| Sbjct 5480067 GGTTCAACAAATGCTAAAGAGCTCTCTGCAAAAGGAGTGAAGATTTGGGATGCCAATGGA 5480008 Query 20173 TCTAAGCAATTTTTACACAGCAATGGATTTGACA-ACCGTCAAGAGGGGGATTTGGGTCC 20231 || |||| || | | | || ||| || || | ||| ||||||||||| || Sbjct 5480007 TCACGTGAATTCTTGGATAAACAAGG-TTTCACTGACAGAACAGAAGGGGATTTGGGACC 5479949 Query 20232 TGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGACATGAACACA 20286 |||||||| || || |||||||| |||||||||||||| || ||||| ||| Sbjct 5479948 AGTGTATGGTTTCCAGTGGAGACACTTTGGAGCTGAATACAAAGATATGAATACA 5479894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398801631002275