Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03- 31] 78,595 sequences; 2,365,766,571 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq78565 113 3e-20 seq39 82.4 6e-11 >seq78565 Length=14964121 Score = 113 bits (124), Expect = 3e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || |||||||| || ||||||||||||| || || | |||| Sbjct 6183962 AGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCT 6183903 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || || || ||| |||| || || || || || || | |||||| || || Sbjct 6183902 TCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCT 6183843 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 |||| |||||| | ||| ||||| | |||||| ||| | ||||||| || Sbjct 6183842 TGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACTTCCAGGGTGATGGTT 6183783 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 ||||| ||||| ||||| ||||| || |||||||| Sbjct 6183782 TTGCCCGTCAAGGTTTTCACAAAGATCTGCATTTT 6183748 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || |||||||| || ||||||||||||| || || | |||| Sbjct 6184190 AGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCT 6184131 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || || || ||| |||| || || || || || || | |||||| || || Sbjct 6184130 TCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCC 6184071 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 |||| |||||| | ||| ||||| | |||||| ||| | ||||||| || Sbjct 6184070 TGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACTTCTAGGGTGATGGTT 6184011 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| ||||| ||||| ||||| || ||||| Sbjct 6184010 TTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 6183979 Score = 102 bits (112), Expect = 6e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || |||||||| || ||||||||||||| || || | |||| Sbjct 6184418 AGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCT 6184359 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || || || ||| |||| || || || || || || | |||||| || || Sbjct 6184358 TCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCT 6184299 Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 |||| | || ||||| | ||| ||||| | |||||| || | ||||||| | Sbjct 6184298 TGGATTT-TGGCTTTGACATTCTCAATGGTGTCGCTGGGCTCTACCTCTAGGGTGATGGT 6184240 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||||| ||||| ||||| ||||| || ||||| Sbjct 6184239 TTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 6184207 >seq39 Length=8077485 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || || | ||| || || || || || || ||||||||||| | || || | |||| Sbjct 4823391 AGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 4823450 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || ||||| ||| |||| || || || || || || | |||||| || || Sbjct 4823451 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCTTTGTCC 4823510 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | |||||| | ||| |||||||| |||||| || | ||||||| | Sbjct 4823511 TGGATCTTAGCCTTGACATTCTCAATAGTGTCACTGGGCTCAACCTCTAGGGTGATGGTC 4823570 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAA 18331 ||||| |||| || || ||||| || ||||| || || Sbjct 4823571 TTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTTGAA 4823608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 378980635273275