Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03-
31] 78,595 sequences; 2,365,766,571 total letters
Query= NC_003083.1
Length=118584
Score E
Sequences producing significant alignments: (Bits) Value
seq78565 113 3e-20
seq39 82.4 6e-11
>seq78565
Length=14964121
Score = 113 bits (124), Expect = 3e-20
Identities = 154/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173
|| |||| ||| || || |||||||| || ||||||||||||| || || | ||||
Sbjct 6183962 AGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCT 6183903
Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233
|||| || || || ||| |||| || || || || || || | |||||| || ||
Sbjct 6183902 TCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCT 6183843
Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293
|||| |||||| | ||| ||||| | |||||| ||| | ||||||| ||
Sbjct 6183842 TGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACTTCCAGGGTGATGGTT 6183783
Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328
||||| ||||| ||||| ||||| || ||||||||
Sbjct 6183782 TTGCCCGTCAAGGTTTTCACAAAGATCTGCATTTT 6183748
Score = 107 bits (118), Expect = 1e-18
Identities = 151/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173
|| |||| ||| || || |||||||| || ||||||||||||| || || | ||||
Sbjct 6184190 AGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCT 6184131
Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233
|||| || || || ||| |||| || || || || || || | |||||| || ||
Sbjct 6184130 TCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCC 6184071
Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293
|||| |||||| | ||| ||||| | |||||| ||| | ||||||| ||
Sbjct 6184070 TGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACTTCTAGGGTGATGGTT 6184011
Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
||||| ||||| ||||| ||||| || |||||
Sbjct 6184010 TTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 6183979
Score = 102 bits (112), Expect = 6e-17
Identities = 152/213 (71%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173
|| |||| ||| || || |||||||| || ||||||||||||| || || | ||||
Sbjct 6184418 AGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCT 6184359
Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233
|||| || || || ||| |||| || || || || || || | |||||| || ||
Sbjct 6184358 TCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCT 6184299
Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292
|||| | || ||||| | ||| ||||| | |||||| || | ||||||| |
Sbjct 6184298 TGGATTT-TGGCTTTGACATTCTCAATGGTGTCGCTGGGCTCTACCTCTAGGGTGATGGT 6184240
Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
|||||| ||||| ||||| ||||| || |||||
Sbjct 6184239 TTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 6184207
>seq39
Length=8077485
Score = 82.4 bits (90), Expect = 6e-11
Identities = 149/218 (68%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173
|| || | ||| || || || || || || ||||||||||| | || || | ||||
Sbjct 4823391 AGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 4823450
Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233
|||| || ||||| ||| |||| || || || || || || | |||||| || ||
Sbjct 4823451 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCTTTGTCC 4823510
Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293
|| | |||||| | ||| |||||||| |||||| || | ||||||| |
Sbjct 4823511 TGGATCTTAGCCTTGACATTCTCAATAGTGTCACTGGGCTCAACCTCTAGGGTGATGGTC 4823570
Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAA 18331
||||| |||| || || ||||| || ||||| || ||
Sbjct 4823571 TTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTTGAA 4823608
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 378980635273275
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |