Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03- 31] 78,595 sequences; 2,365,766,571 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq140 123 2e-23 seq135 82.4 7e-11 >seq140 Length=3053534 Score = 123 bits (136), Expect = 2e-23 Identities = 118/151 (78%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 23046 CCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCG 23105 |||||||||||||| |||||||| || ||||| || || || ||||| ||||| || | Sbjct 15606 CCACCTCGTCTTTGCTGGTGTACTCCACTATTTCTGTGCACAGGTTGCTGCACTTGATGG 15665 Query 23106 TGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCG 23165 | |||| || |||||||||||| | ||| || || |||||||| |||||||| || | Sbjct 15666 TTCCCAGGTTCTGCTGGTTGCTTTTCCTATTACAAGAGTCCTTGTACAGCATGTAAGGTG 15725 Query 23166 TGCCCGTCTCGACCTGCGACTCGATGATCGC 23196 | || |||||| ||| ||||| ||||| || Sbjct 15726 TCCCGGTCTCGGTCTGAGACTCTATGATGGC 15756 Score = 102 bits (112), Expect = 7e-17 Identities = 115/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 23342 TCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGC 23401 || || ||| |||| || ||||| || ||||| || || |||| || || | ||| ||| Sbjct 17331 TCTACCCGTTTCATGAAGAGATCGGGAATCCAGAGGGCAAAGAAGAGGTCCCTGGCTCGC 17390 Query 23402 ACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCAC 23461 |||||| || ||||||||||| |||| || | ||| || || | |||| ||||| Sbjct 17391 TGCTCCTCCTTCCCGGTGTTCTTCTTCAGGTCAAGAAACTCAAAAATGTCCAAGTGCCAA 17450 Query 23462 GGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495 ||||| ||||| | |||||| || || ||||||| Sbjct 17451 GGCTCAAGGTAGATGGCAAAGGCCCCGGGTCTCT 17484 Score = 95.1 bits (104), Expect = 1e-14 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 22691 GGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCC 22750 |||| ||||||||| |||||||| || |||| ||| ||||| ||||| | ||| Sbjct 12786 GGGCAGCCTTCGTAAGTTTCGTATGGGCCATGCTCTTTGGCGAGTTCACAGCTGGATTCC 12845 Query 22751 AACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGCTT 22810 || || |||||||| || ||||||||||| | || |||||| ||| || |||| Sbjct 12846 AAAGCACCGTAATAAATGGTCTCGAAGATCTGCTGGTTCAACAACTGGGCCTCGGGGCTT 12905 Query 22811 TCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATC 22870 || | || | ||||| | |||||| ||||||| ||| || || || || ||||| Sbjct 12906 TCAAAGGGGTATCTCATCAGGATGAACGCATCCGCCAGACCTTGCACTCCAATGCCGATG 12965 Query 22871 GGTCG 22875 || || Sbjct 12966 GGACG 12970 >seq135 Length=2957239 Score = 82.4 bits (90), Expect = 7e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 57528 AATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAA 57587 ||||| |||||||||||||| || || | |||| || || || ||||||||||| ||| Sbjct 2796718 AATCCTCGTAGATTTGTCATCTTCCCACTCCAATACCCGGATATATGGAACATGTATAAA 2796777 Query 57588 AAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGT 57622 |||||| |||| || || ||||| | ||||| || Sbjct 2796778 AAGGCACAAGCTTCCTTCTGGACAGCAGAAGAGGT 2796812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445328462372400