Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03- 31] 78,595 sequences; 2,365,766,571 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq78549 105 8e-18 seq140 91.5 2e-13 seq135 86.0 8e-12 seq81 86.0 8e-12 >seq78549 Length=11360908 Score = 105 bits (116), Expect = 8e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| || || | ||| |||||||| |||||||| ||||||| || | ||| | Sbjct 7628609 CCTCATCTCTGCTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAACCCTCTCTTCT 7628668 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | | |||||| ||||| || || || || || |||||||||||||| ||||| ||||| | Sbjct 7628669 TCAACCAAAAGATGGATGCAAAGGAGCCAGAGAAGAAGATTCCTTCCACTGCTGCAAAAG 7628728 Query 33724 C 33724 | Sbjct 7628729 C 7628729 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/139 (75%), Gaps = 3/139 (2%) Strand=Plus/Plus Query 33235 TTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTC---TTGAGACATAACTCCCATTT 33291 |||||||||| |||| |||| ||| || ||| || |||||||||||||| | Sbjct 7626560 TTTAAAAGTCTGCATCCAAAGTGAAAGAGTTATCTGTGGATTTTGACATAACTCCCATCT 7626619 Query 33292 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTT 33351 | |||||||| || || || || || || || ||||| || ||||||| || ||||| | Sbjct 7626620 TCTGGTATTCTCCTACTCGCTTCTCAAAGAAGTTAGTCTTGCCTTCCAGCGAGATATTCT 7626679 Query 33352 CCATGAAATCAAACGGATT 33370 |||| || ||||| ||||| Sbjct 7626680 CCATAAAGTCAAATGGATT 7626698 >seq140 Length=3053534 Score = 91.5 bits (100), Expect = 2e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 62622 CCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCA 62681 ||| | || || || ||||| || | || | || |||| ||| || | || || ||| Sbjct 12792 CCTTCGTAAGTTTCGTATGGGCCATGCTCTTTGGCGAGTTCACAGCTGGATTCCAAAGCA 12851 Query 62682 CCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAAT 62741 |||||||||||||| || ||||||| || || | || || || ||||| ||||| Sbjct 12852 CCGTAATAAATGGTCTCGAAGATCTGCTGGTTCAACAACTGGGCCTCGGGGCTTTCAAAG 12911 Query 62742 GGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTA 62801 || || | | || || ||||| ||||| | ||||| || ||||| ||||| || | | Sbjct 12912 GGGTATCTCATCAGGATGAACGCATCCGCCAGACCTTGCACTCCAATGCCGATGGGACGA 12971 Query 62802 TGTCTCTTATTAGAGATTTCAGC 62824 || | || || |||| ||||| Sbjct 12972 TGGCGTTTGTTGGAGAGCTCAGC 12994 >seq135 Length=2957239 Score = 86.0 bits (94), Expect = 8e-12 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 34079 CACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 34138 ||| ||||| ||||||| || || || | ||||||||||||||| ||||| || || | Sbjct 2796813 CACCTCTTCTGCTGTCCAGAAGGAAGCTTGTGCCTTTTTATACATGTTCCATATATCCGG 2796754 Query 34139 ATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 34175 ||||||| |||||| || ||||||||| |||||| Sbjct 2796753 GTATTGGAGTGGGAAGATGACAAATCTACGAGGATTT 2796717 >seq81 Length=4821437 Score = 86.0 bits (94), Expect = 8e-12 Identities = 93/123 (76%), Gaps = 8/123 (7%) Strand=Plus/Plus Query 188489 GTTACTTTCTATGATGCGCGTATC----GTTATACAAGCTTTCATGTTGACTACTGCAGT 188544 || |||||||||||| ||||| || |||||||||| || |||||||||| || Sbjct 4243707 GTGACTTTCTATGAT----GTATCAGTTGTCTTACAAGCTTTTATTCTGACTACTGCTGT 4243762 Query 188545 GTTTCTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAAC 188604 |||||||| ||||| | |||| | || || |||||||||||||| ||| ||| | | Sbjct 4243763 GTTTCTTGGGTTGACTGTGTATACTTTGCAGTCCAAGAGAGATTTCAGCAAATTTGGAGC 4243822 Query 188605 AGG 188607 ||| Sbjct 4243823 AGG 4243825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629198843571600