Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03- 31] 78,595 sequences; 2,365,766,571 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq78549 116 3e-21 seq135 93.3 4e-14 seq140 82.4 7e-11 >seq78549 Length=11360908 Score = 116 bits (128), Expect = 3e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || ||||| || || |||||||||||||| || | ||| ||||| || |||| || || Sbjct 7628611 TCATCTCTGCTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAACCCTCTCTTCTTC 7628670 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | |||||| || | ||||| || ||||| ||||| ||||| ||||| |||||||| ||| Sbjct 7628671 AACCAAAAGATGGATGCAAAGGAGCCAGAGAAGAAGATTCCTTCCACTGCTGCAAAAGCT 7628730 Query 11774 ACTACTCTTTCTCC 11787 ||||| | |||||| Sbjct 7628731 ACTACACGTTCTCC 7628744 Score = 86.0 bits (94), Expect = 6e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 11900 TATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAAT 11959 || |||||||| | | ||| |||||||||||||| || ||||||||||| || || || Sbjct 7631708 TAAGTATCTATGAGCAGACTGTACATTTCTGAATGTATGTTTTCCATAGCAATCTGGAAG 7631767 Query 11960 CCATAGAAACATCGTGCCTCTGAACACTGTACATC 11994 ||||||||||| ||||| |||| |||||| || Sbjct 7631768 CCATAGAAACAGCGTGCTTCTGTTACCTGTACTTC 7631802 >seq135 Length=2957239 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || |||| || || || ||||| || ||||| | ||| ||||||| || | || || Sbjct 2809034 TCATCTCGGCTAATGAGCTCATTGGAGAATGTCAGTCCAGGCATCAGACCCCTCTTCTTC 2808975 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | |||||| ||||||||||| ||||| || ||||| || || ||||| || ||||| || Sbjct 2808974 AGCCAAAAAATAGCAGCAAAAGAACCTGAGAAGAAGATCCCTTCCACTGCGGCAAAGGCA 2808915 Query 11774 ACTACTCTTTCTCC 11787 || ||||| || || Sbjct 2808914 ACCACTCTCTCCCC 2808901 >seq140 Length=3053534 Score = 82.4 bits (90), Expect = 7e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| || || || | || || | ||| || || || || || || ||||||||| Sbjct 10864 ACCTGAAACTCGCCCGAGAGGACCCTGCGTGTGTAGATGTTACTGGTGTAGGGTTCAATG 10923 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 |||||||| || | || || |||| ||||| ||||| |||||||| | | || ||| Sbjct 10924 GACTCATTGTTGCCCAAGATCTGAGCAGTAGAAGCAGTTGGCATTGGAGAAAGGAGCAGG 10983 Query 37258 CTATTTCT 37265 || ||||| Sbjct 10984 CTGTTTCT 10991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468064503666800