Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03- 31] 78,595 sequences; 2,365,766,571 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq81 122 1e-22 seq140 96.9 5e-15 >seq81 Length=4821437 Score = 122 bits (134), Expect = 1e-22 Identities = 144/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 9227 TTATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATC 9286 |||||| ||||| || |||| | || | | ||| ||||||||||||||||||||||| Sbjct 4246104 TTATTTTTTATTTAATGCTTCTAGTAGGCGCAGCAGGTGCAAGAACAGATTGATGATATC 4246045 Query 9287 CAAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGA 9346 ||||||| ||| || | || || | ||| |||||||| || || | || || || | Sbjct 4246044 TAAGTAGAGATTAATGGCAGCCAATATATACTCTTCAGGGGACAGTCTGTGCATCAGCAA 4245985 Query 9347 GTGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAG 9406 || ||||||||||| || ||||||||||| | || || || ||||| | | ||| Sbjct 4245984 ATGAGTGTCATAGATGATAAATCCGCAGAACAGCAGCGCTCCCGCAGCAGCAAACAACAG 4245925 Query 9407 CTCCACTGTTTCACT 9421 ||| | ||| ||||| Sbjct 4245924 CTCTATTGTCTCACT 4245910 Score = 111 bits (122), Expect = 2e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 |||||||||| ||| |||||||||||||| || || | |||||| |||||| ||||| Sbjct 4243825 CCTGCTCCAAATTTGCTGAAATCTCTCTTGGACTGCAAAGTATACACAGTCAACCCAAGA 4243766 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAAC 9598 ||||| ||||||||||| || |||||||| | || || |||||||||||||| || Sbjct 4243765 AACACAGCAGTAGTCAGAATAAAAGCTTGTAAGACAACTGATACATCATAGAAAGTCAC 4243707 >seq140 Length=3053534 Score = 96.9 bits (106), Expect = 5e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 65415 CCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCA 65474 ||| | || || |||||||| || | || | || |||||||| || | || || ||| Sbjct 12792 CCTTCGTAAGTTTCGTATGGGCCATGCTCTTTGGCGAGTTCACAGCTGGATTCCAAAGCA 12851 Query 65475 CCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAAT 65534 |||||||||||||| |||||||||| || || | || || || |||| ||||| Sbjct 12852 CCGTAATAAATGGTCTCGAAGATCTGCTGGTTCAACAACTGGGCCTCGGGGCTTTCAAAG 12911 Query 65535 GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTA 65594 || || | | || || ||||| || || | ||||| || ||||| ||||| || | | Sbjct 12912 GGGTATCTCATCAGGATGAACGCATCCGCCAGACCTTGCACTCCAATGCCGATGGGACGA 12971 Query 65595 TGTCTCTTATTAGAGATTTCAGC 65617 || | || || |||| ||||| Sbjct 12972 TGGCGTTTGTTGGAGAGCTCAGC 12994 Score = 87.8 bits (96), Expect = 2e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| || | ||| || ||||||||||| | || || || || || || || |||| | Sbjct 26182 CACTGAACACTTTCTTGGTTTCTTTGTGCAAGTTGGAGACCGCGATCCTTGCTGCTAGGA 26241 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 ||||||| || || || | ||||| || || ||| | || || ||||| || |||| Sbjct 26242 TGGCATAGTCGGGGTGCTTGGTAGTGAGGGTTGCGGCTGTCTCAGCAGCCAGTGTATCCA 26301 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 ||| || ||||| || ||| | || | || ||||| |||||||| Sbjct 26302 GTTCCACAGTTGTGACACCACTGTACAGACCCTGGATCACCTTCAT 26347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657526186359800