Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03-
31] 78,595 sequences; 2,365,766,571 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq78549 116 5e-21
seq135 114 2e-20
>seq78549
Length=11360908
Score = 116 bits (128), Expect = 5e-21
Identities = 100/124 (81%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041
|||| ||||| || || ||||| || ||||| |||||||| ||||||| || | ||| |
Sbjct 7628609 CCTCATCTCTGCTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAACCCTCTCTTCT 7628668
Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101
| | |||||| ||||| ||||| || ||||| |||||||||||||| ||||| ||||| |
Sbjct 7628669 TCAACCAAAAGATGGATGCAAAGGAGCCAGAGAAGAAGATTCCTTCCACTGCTGCAAAAG 7628728
Query 50102 CAAC 50105
| ||
Sbjct 7628729 CTAC 7628732
Score = 91.5 bits (100), Expect = 2e-13
Identities = 104/139 (75%), Gaps = 3/139 (2%)
Strand=Plus/Plus
Query 49613 TTTAAAAGTCAACATCTAGAGAAAAATGATTATCTTC---TTGAGACATAACTCCCATTT 49669
|||||||||| |||| | || ||| |||||| || |||||||||||||| |
Sbjct 7626560 TTTAAAAGTCTGCATCCAAAGTGAAAGAGTTATCTGTGGATTTTGACATAACTCCCATCT 7626619
Query 49670 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTT 49729
| |||||||| || || || || || || || ||||| || ||||||| || ||||| |
Sbjct 7626620 TCTGGTATTCTCCTACTCGCTTCTCAAAGAAGTTAGTCTTGCCTTCCAGCGAGATATTCT 7626679
Query 49730 CCATGAAATCAAACGGATT 49748
|||| || ||||| |||||
Sbjct 7626680 CCATAAAGTCAAATGGATT 7626698
>seq135
Length=2957239
Score = 114 bits (126), Expect = 2e-20
Identities = 107/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041
|||| |||| ||||| || || ||||| || || ||||| ||||| || || | ||| |
Sbjct 2809036 CCTCATCTCGGCTAATGAGCTCATTGGAGAATGTCAGTCCAGGCATCAGACCCCTCTTCT 2808977
Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101
| |||||||| || | ||||| || || || |||||||| ||||| |||||||||||||
Sbjct 2808976 TCAGCCAAAAAATAGCAGCAAAAGAACCTGAGAAGAAGATCCCTTCCACTGCGGCAAAGG 2808917
Query 50102 CAACAAGTCTCTCTCC 50117
|||| | |||||| ||
Sbjct 2808916 CAACCACTCTCTCCCC 2808901
Score = 84.2 bits (92), Expect = 3e-11
Identities = 76/96 (79%), Gaps = 0/96 (0%)
Strand=Plus/Minus
Query 50458 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 50517
|| ||||| ||||||| || || || | ||||||||||||||| ||||| || || |
Sbjct 2796812 ACCTCTTCTGCTGTCCAGAAGGAAGCTTGTGCCTTTTTATACATGTTCCATATATCCGGG 2796753
Query 50518 TATTGGATTGGGAAAATAACAAATCTATTTGGATTT 50553
||||||| |||||| || ||||||||| ||||||
Sbjct 2796752 TATTGGAGTGGGAAGATGACAAATCTACGAGGATTT 2796717
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 717563145795800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |