Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03- 31] 78,595 sequences; 2,365,766,571 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq78549 111 2e-19 seq135 87.8 2e-12 seq140 84.2 3e-11 >seq78549 Length=11360908 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| || || | ||| || ||||| |||||||| ||||||| || | ||| | Sbjct 7628609 CCTCATCTCTGCTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAACCCTCTCTTCT 7628668 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | | |||||| || || ||||| || ||||| |||||||||||||| ||||| ||||| | Sbjct 7628669 TCAACCAAAAGATGGATGCAAAGGAGCCAGAGAAGAAGATTCCTTCCACTGCTGCAAAAG 7628728 Query 42207 C 42207 | Sbjct 7628729 C 7628729 Score = 96.9 bits (106), Expect = 5e-15 Identities = 105/139 (76%), Gaps = 3/139 (2%) Strand=Plus/Plus Query 41718 TTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTC---TTGAGACATAACTCCCATTT 41774 |||||||||| |||| |||| ||| || ||| || |||||||||||||| | Sbjct 7626560 TTTAAAAGTCTGCATCCAAAGTGAAAGAGTTATCTGTGGATTTTGACATAACTCCCATCT 7626619 Query 41775 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTT 41834 | |||||||| || || || || || || || |||||||| ||||||| || ||||| | Sbjct 7626620 TCTGGTATTCTCCTACTCGCTTCTCAAAGAAGTTAGTCTTGCCTTCCAGCGAGATATTCT 7626679 Query 41835 CCATGAAATCAAACGGATT 41853 |||| || ||||| ||||| Sbjct 7626680 CCATAAAGTCAAATGGATT 7626698 Score = 96.9 bits (106), Expect = 5e-15 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 42325 ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGC 42384 |||||||| || ||||| || | ||||| |||||||||||||| |||||||| || || Sbjct 7631698 ATCTTTAATGTAAGTATCTATGAGCAGACTGTACATTTCTGAATGTATGTTTTCCATAGC 7631757 Query 42385 CATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCT 42430 ||||| || || |||||||| | || || || |||||||||||| Sbjct 7631758 AATCTGGAAGCCATAGAAACAGCGTGCTTCTGTTACCTGTACTTCT 7631803 >seq135 Length=2957239 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 42563 ACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATGA 42622 || |||||| | ||||| || || |||| ||||||||||||||| ||||| ||||| | Sbjct 2796812 ACCTCTTCTGCTGTCCAGAAGGAAGCTTGTGCCTTTTTATACATGTTCCATATATCCGGG 2796753 Query 42623 TATTGAATTGGGAAAATAACAAATCTATTTGGATTT 42658 ||||| | |||||| || ||||||||| |||||| Sbjct 2796752 TATTGGAGTGGGAAGATGACAAATCTACGAGGATTT 2796717 >seq140 Length=3053534 Score = 84.2 bits (92), Expect = 3e-11 Identities = 124/176 (70%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 71377 CCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCT 71436 ||| | || || |||||||| || | | || ||| |||||||| || | || || || Sbjct 12792 CCTTCGTAAGTTTCGTATGGGCCATGCTCTTTGGCGAGTTCACAGCTGGATTCCAAAGCA 12851 Query 71437 CCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAAT 71496 || ||||||||||| ||||| |||| || || | || || || ||||| ||||| Sbjct 12852 CCGTAATAAATGGTCTCGAAGATCTGCTGGTTCAACAACTGGGCCTCGGGGCTTTCAAAG 12911 Query 71497 GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGG 71552 || || | | || || ||||| || || | ||||| || ||||| ||||| || Sbjct 12912 GGGTATCTCATCAGGATGAACGCATCCGCCAGACCTTGCACTCCAATGCCGATGGG 12967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670479847682200