Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03- 31] 78,595 sequences; 2,365,766,571 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq78565 109 6e-19 >seq78565 Length=14964121 Score = 109 bits (120), Expect = 6e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || ||||| | |||| || || || | || |||||||| || |||||||| ||| | Sbjct 6184205 CCACCTCGGAGGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGAC 6184146 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| | ||||| || || || || ||| ||||||| | ||||| || ||||| Sbjct 6184145 AGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGA 6184086 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||||||||| ||||| || | | || | ||||| |||| |||||| Sbjct 6184085 ATGCCTTCTTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACT 6184026 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | || ||||| ||||| ||||| || || || |||||| Sbjct 6184025 TCTAGGGTGATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCATA 6183978 Score = 109 bits (120), Expect = 6e-19 Identities = 159/225 (71%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 142961 CCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATT 143020 ||||| | |||| || || || | || |||||||| || |||||||| ||| || Sbjct 6184430 CCTCGGAGGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGG 6184371 Query 143021 GTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATG 143080 |||| | ||||| || || || || ||| ||||||| | ||||| || ||||| ||| Sbjct 6184370 GTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATG 6184311 Query 143081 CCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCA 143140 ||||||||||| ||||| ||| | | || | ||||| |||| ||||| || Sbjct 6184310 CCTTCTTTGTCTTGGATTTTGGCTTTGACATTCTCAATGGTGTCGCTGGGCTCTACCTCT 6184251 Query 143141 ACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 | || | || ||||| ||||| ||||| || || || |||||| Sbjct 6184250 AGGGTGATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCATA 6184206 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || ||||| | |||| || || || | || |||||||| || |||||||| ||| | Sbjct 6183977 CCACCTCGGAGGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGAC 6183918 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| | ||||| || || || || ||| ||||||| | ||||| || ||||| Sbjct 6183917 AGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGA 6183858 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||||||||| ||||| || | | || | ||||| |||| |||||| Sbjct 6183857 ATGCCTTCTTTGTCTTGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACT 6183798 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | || ||||| ||||| ||||| || || || ||||| Sbjct 6183797 TCCAGGGTGATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 6183751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506516290040400