Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03- 31] 78,595 sequences; 2,365,766,571 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq78549 89.7 4e-13 seq135 89.7 4e-13 >seq78549 Length=11360908 Score = 89.7 bits (98), Expect = 4e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 13420 AATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTG 13479 ||| ||||||||||| | | || |||||||||||||| || |||||||| || || || Sbjct 7631704 AATGTAAGTATCTATGAGCAGACTGTACATTTCTGAATGTATGTTTTCCATAGCAATCTG 7631763 Query 13480 GAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC 13518 ||| ||||| ||||| | || |||| |||||| ||||| Sbjct 7631764 GAAGCCATAGAAACAGCGTGCTTCTGTTACCTGTACTTC 7631802 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234 |||||||| || || || || || ||||| || || || ||||| | ||||| || || Sbjct 7628611 TCATCTCTGCTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAACCCTCTCTTCTTC 7628670 Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294 | |||||| || | ||||| || || || || || |||||||| ||||||||||| ||| Sbjct 7628671 AACCAAAAGATGGATGCAAAGGAGCCAGAGAAGAAGATTCCTTCCACTGCTGCAAAAGCT 7628730 Query 13295 A 13295 | Sbjct 7628731 A 7628731 >seq135 Length=2957239 Score = 89.7 bits (98), Expect = 4e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234 ||||||| || || ||||| || || ||||| || || ||||| || || | || || Sbjct 2809034 TCATCTCGGCTAATGAGCTCATTGGAGAATGTCAGTCCAGGCATCAGACCCCTCTTCTTC 2808975 Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGC 13293 | |||||| ||||||||||| ||||| || || || || ||||| ||||| ||||| || Sbjct 2808974 AGCCAAAAAATAGCAGCAAAAGAACCTGAGAAGAAGATCCCTTCCACTGCGGCAAAGGC 2808916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430569572060190