Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03-
31] 78,595 sequences; 2,365,766,571 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq78565 152 1e-31
seq39 152 1e-31
seq3 141 2e-28
seq78549 107 4e-18
seq2169 91.5 3e-13
seq2 89.7 1e-12
>seq78565
Length=14964121
Score = 152 bits (168), Expect = 1e-31
Identities = 158/207 (76%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| ||||||||||| || || ||||| || || || | || ||||| || || |||||
Sbjct 6183947 GTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGCTTTCCG 6183888
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
||||| || |||||||| || || ||||| || |||||||| || || || || || ||
Sbjct 6183887 GCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCTTGGATTTTGGCCTTG 6183828
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
||||| || | ||| ||||| || ||||| || || || || || || || || | |||
Sbjct 6183827 ACATTCTCAATGGTGTCGCTGGGCTCTACTTCCAGGGTGATGGTTTTGCCCGTCAAGGTT 6183768
Query 104543 TTTACAAATATCTGCATTTTGTGTACA 104569
|| ||||| ||||||||||| ||||||
Sbjct 6183767 TTCACAAAGATCTGCATTTTCTGTACA 6183741
Score = 152 bits (168), Expect = 1e-31
Identities = 152/197 (77%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| ||||||||||| || || ||||| || || || | || ||||| || || |||||
Sbjct 6184403 GTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGCTTTCCG 6184344
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
||||| || |||||||| || || ||||| || |||||||| || || || || |||||
Sbjct 6184343 GCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCTTGGATTTTGGCTTTG 6184284
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
||||| || | ||| ||||| || ||||||||||| || || || || || || | |||
Sbjct 6184283 ACATTCTCAATGGTGTCGCTGGGCTCTACCTCTAGGGTGATGGTTTTGCCCGTCAAGGTT 6184224
Query 104543 TTTACAAATATCTGCAT 104559
|| ||||| ||||||||
Sbjct 6184223 TTCACAAAGATCTGCAT 6184207
Score = 149 bits (164), Expect = 1e-30
Identities = 151/197 (77%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| ||||||||||| || || ||||| || || || | || ||||| || || |||||
Sbjct 6184175 GTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGCTTTCCG 6184116
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
||||| || |||||||| || || ||||| || |||||||| ||||| || || || ||
Sbjct 6184115 GCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCCTGGATTTTGGCCTTG 6184056
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
||||| || | ||| ||||| || ||||| ||||| || || || || || || | |||
Sbjct 6184055 ACATTCTCAATGGTGTCGCTGGGCTCTACTTCTAGGGTGATGGTTTTGCCCGTCAAGGTT 6183996
Query 104543 TTTACAAATATCTGCAT 104559
|| ||||| ||||||||
Sbjct 6183995 TTCACAAAGATCTGCAT 6183979
>seq39
Length=8077485
Score = 152 bits (168), Expect = 1e-31
Identities = 152/197 (77%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || ||||| || || ||||||||||| || | || ||||| || || || |||
Sbjct 4823178 GTGGACTCCTTCTGGATGTTGTAGTCAGATAGGGTGCGGCCATCTTCCAGCTGCTTGCCA 4823237
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
||||| || |||||||| || ||||| || || |||||||| ||||| ||||| || ||
Sbjct 4823238 GCAAAGATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCTTTGTCCTGGATCTTAGCCTTG 4823297
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
||||| || | || || || || || |||||||| || || ||||| ||||| || ||
Sbjct 4823298 ACATTCTCAATAGTGTCACTGGGCTCAACCTCTAGGGTGATGGTCTTGCCAGTCAGGGTC 4823357
Query 104543 TTTACAAATATCTGCAT 104559
|| ||||| ||||||||
Sbjct 4823358 TTCACAAAGATCTGCAT 4823374
>seq3
Length=75876001
Score = 141 bits (156), Expect = 2e-28
Identities = 129/163 (79%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 78488 GCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATC 78547
|| ||||||||||| | | |||| |||||||| || ||| | || || || || ||||||
Sbjct 66048352 GCTTTATGGTGGTACTTTGTCTCAAAAGGAATTGAGTACTTGGACACAATATTTTTCATC 66048411
Query 78548 CTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTT 78607
| | ||||||||||| ||||| ||||| || ||||| ||||| ||||| ||||||||
Sbjct 66048412 TTGAGGAAGAAATTTAACCAAATCAGTTTCCTTCATGTCTATCACCATTTCACTATGTTC 66048471
Query 78608 ACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650
|| ||| | ||||| ||||| || ||| | ||||||||||||
Sbjct 66048472 ACCTTGTGGTGGATTGGTATCAAGTGGGTTCCAGGAGGACAAG 66048514
>seq78549
Length=11360908
Score = 107 bits (118), Expect = 4e-18
Identities = 104/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185
|||||| | |||| |||||||| || || ||||| || ||||| || || || |||||
Sbjct 7628744 GGAGAACGTGTAGTAGCTTTTGCAGCAGTGGAAGGAATCTTCTTCTCTGGCTCCTTTGCA 7628685
Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245
| ||||||||||||||||| ||||| | ||||| ||| | ||||| ||||| ||| |
Sbjct 7628684 TCCATCTTTTGGTTGAAGAAGAGAGGGTTAATGCCTGGACTCACTTTTTCTAATGAACTC 7628625
Query 269246 ATAAGCAGGGACGA 269259
|| ||||| || ||
Sbjct 7628624 ATCAGCAGAGATGA 7628611
Score = 95.1 bits (104), Expect = 3e-14
Identities = 85/107 (79%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 268910 TTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATA 268969
||| | ||||| |||||| | | ||||| | ||||| || || |||||||| |||||
Sbjct 7631811 TTCAGCCAAGAAGTACAGGTAACAGAAGCACGCTGTTTCTATGGCTTCCAGATTGCTATG 7631752
Query 268970 GAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATAT 269016
||||| || |||||||| ||||||||||| | ||||||||||| ||
Sbjct 7631751 GAAAACATACATTCAGAAATGTACAGTCTGCTCATAGATACTTACAT 7631705
>seq2169
Length=20274
Score = 91.5 bits (100), Expect = 3e-13
Identities = 89/115 (77%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 78494 TGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATCCTACGA 78553
|||||||||||| | || |||| ||| |||| | | || ||||| ||||| | || |
Sbjct 19630 TGGTGGTATTATTTTTCCAAAGCAATTGAATTCATGGACACTATTTTCTTTGTACTGAGG 19571
Query 78554 AAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTTA 78608
|||||| | |||||||| ||| || ||||||||||||||| ||||||||||
Sbjct 19570 AAGAAAAACAGTCAAATTACTTTCCTTCATGTATATCATCATGCCACTATGTTTA 19516
>seq2
Length=68452538
Score = 89.7 bits (98), Expect = 1e-12
Identities = 94/124 (76%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 104424 CAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTA 104483
|| |||| || | || ||||||||||| |||||||| |||||||| ||||| || || |
Sbjct 8820693 CATAAATAAGTCATTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTCA 8820634
Query 104484 CATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTT 104543
||||||||| ||||| ||| || ||||| || || || || || || || || || |
Sbjct 8820633 CATTTTCTATAGTATCAGAAGGCTCAACCTCAAGGGTGATGGTTTTCCCGGTCAGGGTCT 8820574
Query 104544 TTAC 104547
| ||
Sbjct 8820573 TCAC 8820570
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1150238943610260
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |