Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03- 31] 78,595 sequences; 2,365,766,571 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq78565 152 1e-31 seq39 152 1e-31 seq3 141 2e-28 seq78549 107 4e-18 seq2169 91.5 3e-13 seq2 89.7 1e-12 >seq78565 Length=14964121 Score = 152 bits (168), Expect = 1e-31 Identities = 158/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||||||||| || || ||||| || || || | || ||||| || || ||||| Sbjct 6183947 GTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGCTTTCCG 6183888 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || |||||||| || || ||||| || |||||||| || || || || || || Sbjct 6183887 GCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCTTGGATTTTGGCCTTG 6183828 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| ||||| || ||||| || || || || || || || || | ||| Sbjct 6183827 ACATTCTCAATGGTGTCGCTGGGCTCTACTTCCAGGGTGATGGTTTTGCCCGTCAAGGTT 6183768 Query 104543 TTTACAAATATCTGCATTTTGTGTACA 104569 || ||||| ||||||||||| |||||| Sbjct 6183767 TTCACAAAGATCTGCATTTTCTGTACA 6183741 Score = 152 bits (168), Expect = 1e-31 Identities = 152/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||||||||| || || ||||| || || || | || ||||| || || ||||| Sbjct 6184403 GTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGCTTTCCG 6184344 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || |||||||| || || ||||| || |||||||| || || || || ||||| Sbjct 6184343 GCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCTTGGATTTTGGCTTTG 6184284 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| ||||| || ||||||||||| || || || || || || | ||| Sbjct 6184283 ACATTCTCAATGGTGTCGCTGGGCTCTACCTCTAGGGTGATGGTTTTGCCCGTCAAGGTT 6184224 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 6184223 TTCACAAAGATCTGCAT 6184207 Score = 149 bits (164), Expect = 1e-30 Identities = 151/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||||||||| || || ||||| || || || | || ||||| || || ||||| Sbjct 6184175 GTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGCTTTCCG 6184116 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || |||||||| || || ||||| || |||||||| ||||| || || || || Sbjct 6184115 GCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCCTGGATTTTGGCCTTG 6184056 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| ||||| || ||||| ||||| || || || || || || | ||| Sbjct 6184055 ACATTCTCAATGGTGTCGCTGGGCTCTACTTCTAGGGTGATGGTTTTGCCCGTCAAGGTT 6183996 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 6183995 TTCACAAAGATCTGCAT 6183979 >seq39 Length=8077485 Score = 152 bits (168), Expect = 1e-31 Identities = 152/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||||||||| || | || ||||| || || || ||| Sbjct 4823178 GTGGACTCCTTCTGGATGTTGTAGTCAGATAGGGTGCGGCCATCTTCCAGCTGCTTGCCA 4823237 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || |||||||| || ||||| || || |||||||| ||||| ||||| || || Sbjct 4823238 GCAAAGATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCTTTGTCCTGGATCTTAGCCTTG 4823297 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | || || || || || |||||||| || || ||||| ||||| || || Sbjct 4823298 ACATTCTCAATAGTGTCACTGGGCTCAACCTCTAGGGTGATGGTCTTGCCAGTCAGGGTC 4823357 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 4823358 TTCACAAAGATCTGCAT 4823374 >seq3 Length=75876001 Score = 141 bits (156), Expect = 2e-28 Identities = 129/163 (79%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 78488 GCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATC 78547 || ||||||||||| | | |||| |||||||| || ||| | || || || || |||||| Sbjct 66048352 GCTTTATGGTGGTACTTTGTCTCAAAAGGAATTGAGTACTTGGACACAATATTTTTCATC 66048411 Query 78548 CTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTT 78607 | | ||||||||||| ||||| ||||| || ||||| ||||| ||||| |||||||| Sbjct 66048412 TTGAGGAAGAAATTTAACCAAATCAGTTTCCTTCATGTCTATCACCATTTCACTATGTTC 66048471 Query 78608 ACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650 || ||| | ||||| ||||| || ||| | |||||||||||| Sbjct 66048472 ACCTTGTGGTGGATTGGTATCAAGTGGGTTCCAGGAGGACAAG 66048514 >seq78549 Length=11360908 Score = 107 bits (118), Expect = 4e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 |||||| | |||| |||||||| || || ||||| || ||||| || || || ||||| Sbjct 7628744 GGAGAACGTGTAGTAGCTTTTGCAGCAGTGGAAGGAATCTTCTTCTCTGGCTCCTTTGCA 7628685 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 | ||||||||||||||||| ||||| | ||||| ||| | ||||| ||||| ||| | Sbjct 7628684 TCCATCTTTTGGTTGAAGAAGAGAGGGTTAATGCCTGGACTCACTTTTTCTAATGAACTC 7628625 Query 269246 ATAAGCAGGGACGA 269259 || ||||| || || Sbjct 7628624 ATCAGCAGAGATGA 7628611 Score = 95.1 bits (104), Expect = 3e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 268910 TTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATA 268969 ||| | ||||| |||||| | | ||||| | ||||| || || |||||||| ||||| Sbjct 7631811 TTCAGCCAAGAAGTACAGGTAACAGAAGCACGCTGTTTCTATGGCTTCCAGATTGCTATG 7631752 Query 268970 GAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATAT 269016 ||||| || |||||||| ||||||||||| | ||||||||||| || Sbjct 7631751 GAAAACATACATTCAGAAATGTACAGTCTGCTCATAGATACTTACAT 7631705 >seq2169 Length=20274 Score = 91.5 bits (100), Expect = 3e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 78494 TGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATCCTACGA 78553 |||||||||||| | || |||| ||| |||| | | || ||||| ||||| | || | Sbjct 19630 TGGTGGTATTATTTTTCCAAAGCAATTGAATTCATGGACACTATTTTCTTTGTACTGAGG 19571 Query 78554 AAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTTA 78608 |||||| | |||||||| ||| || ||||||||||||||| |||||||||| Sbjct 19570 AAGAAAAACAGTCAAATTACTTTCCTTCATGTATATCATCATGCCACTATGTTTA 19516 >seq2 Length=68452538 Score = 89.7 bits (98), Expect = 1e-12 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 104424 CAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTA 104483 || |||| || | || ||||||||||| |||||||| |||||||| ||||| || || | Sbjct 8820693 CATAAATAAGTCATTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTCA 8820634 Query 104484 CATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTT 104543 ||||||||| ||||| ||| || ||||| || || || || || || || || || | Sbjct 8820633 CATTTTCTATAGTATCAGAAGGCTCAACCTCAAGGGTGATGGTTTTCCCGGTCAGGGTCT 8820574 Query 104544 TTAC 104547 | || Sbjct 8820573 TCAC 8820570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150238943610260