Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03-
31] 78,595 sequences; 2,365,766,571 total letters
Query= NC_006150.1
Length=221454
Score E
Sequences producing significant alignments: (Bits) Value
seq800 143 4e-29
seq45 123 4e-23
>seq800
Length=84292
Score = 143 bits (158), Expect = 4e-29
Identities = 212/300 (71%), Gaps = 4/300 (1%)
Strand=Plus/Minus
Query 8693 GGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATCCCA 8752
||||| || || ||||| | |||| || ||| | | ||| | |||| || ||
Sbjct 67531 GGACAGCCCTTCACGTTATTGCAGATGAGCTTCTGTAGGGAGGCAGTATTGATTATTTCA 67472
Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812
|| ||||| | |||||| |||||||| ||||||||||| | || || ||||| | ||
Sbjct 67471 AAGCCCACTTTTCCGCCAAAGGTGCTTGGTTTCCAGTACTCTGGAGAACAGATAGCATTT 67412
Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATG 8872
|||| || ||||| | || || || || || || || | ||| ||||||| ||||||
Sbjct 67411 CCCATCAGCCCTTTCAAAGAGAATGGTGCTCCAAGTTCCACCATGGTCTCACCAAAGATG 67352
Query 8873 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCT 8932
|| ||||| ||| |||| || | | || | ||||| ||||| ||| || ||||||
Sbjct 67351 GCACCAGGACGAGGCCTTTCTACTAGAAGGCCAGGGTACAGCTCCATAGCATCAATGTCT 67292
Query 8933 CCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT----TTTATTAATAAA 8988
|| ||||| | | ||| || || ||||| ||||||||||| |||||||||||
Sbjct 67291 CCATAAAGCTCTTCTAATTCAGCTGCCATTTCTTTTTCTCCTGTAATAATTATTAATAAA 67232
Score = 98.7 bits (108), Expect = 1e-15
Identities = 138/194 (71%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 10025 TGTTCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCT 10084
|| |||||||||||| || || |||| |||||||| || ||| ||| ||| |
Sbjct 62904 TGATCTTACCCCATGGCCGAGAGCTTTGGTGAAGGCTGGCCCTTTGTGGTGATCTGTCTT 62845
Query 10085 AAAAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGG 10144
||| |||||||| ||||||||||| |||| || | ||||| | || ||||| || ||
Sbjct 62844 AAAGAACTGGTGGGTGAAATGTTGAGCAAAGAACGTGAACATCATATTTGTGCCTTGAGG 62785
Query 10145 ATCGGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAG 10204
||| ||| | || | ||| || ||| ||| |||||||| ||| | ||| || ||
Sbjct 62784 ATCAGGAATAAATTTTTTCCTCAGCAGAAATTTCTCCACAACTACTGCAGAATCTGGGAG 62725
Query 10205 AttttttttACCTG 10218
| || |||||||
Sbjct 62724 CTCCTTCTTACCTG 62711
Score = 95.1 bits (104), Expect = 2e-14
Identities = 166/242 (69%), Gaps = 0/242 (0%)
Strand=Plus/Minus
Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681
||||| | || || || || || || || ||| ||||||||||||| | | || ||
Sbjct 64323 ATGAGCCTGGTAGTTTGGAAAAGCTGCTCATCATTCCATTCTGGATGCACCTGCTTAAGG 64264
Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741
| || || || | |||||||| |||||||| || || || |||||||| | ||| ||
Sbjct 64263 ATGTCACAGACCCGATTGTGTTCTCTGAGCCATATTGTGGCATACATCATTAAACCTGGG 64204
Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801
|||| ||||| |||| | || |||| | ||| | | || || | || ||
Sbjct 64203 ACCAAACCAAACACCTCATTGCCTACAGAAAATTGCAGGTGCTTAGGAACATGAGGTGGG 64144
Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATC 9861
|||||||| | |||| || || || | ||| || |||||||| || ||||| |||
Sbjct 64143 TAGATCATTTCTGCCTGAGTGTCCTTCACAGTGGGAGGGTACATTTCTCCATCAATCATC 64084
Query 9862 TG 9863
||
Sbjct 64083 TG 64082
>seq45
Length=7072151
Score = 123 bits (136), Expect = 4e-23
Identities = 167/233 (72%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669
|| ||||| | |||||| || | ||||| || || || ||||| ||||| |||||
Sbjct 4006970 TCACCGATGAGGATGAGGCGGGCTGTCTGGAAGAGCTGCTCGTCGCTCCACGTCGGATGC 4007029
Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729
|| | ||||| || || || |||| |||||| || | |||||||| || || ||||||
Sbjct 4007030 TCCTGCTTCAGCACGTCACAGACTCGGTTGTGCTCGCGAAGCCAGATGGTCGCATACATC 4007089
Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGC 9789
|| || || |||| ||||||||| |||| || || |||||||| || | | | |||
Sbjct 4007090 ATTAGCCCCGGCAGCAGGCCAAACACCTCCTGGCCCACAGCCAGCTGCTTCTCCTTGGGG 4007149
Query 9790 ACTTCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATA 9842
||| ||| ||||||||||| ||| | | | ||||| ||| |||||
Sbjct 4007150 GTGCCGGCAGGGTAGATCATGTGAACCGGAGCCTTGAGGACCGTGGGTGGATA 4007202
Score = 104 bits (114), Expect = 3e-17
Identities = 195/285 (68%), Gaps = 4/285 (1%)
Strand=Plus/Plus
Query 8693 GGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATCCCA 8752
||||||| ||||||||| ||| || || ||||| | || | || || ||| ||
Sbjct 4002363 GGACACCGCTTGACGTTGAGACACACGAGCTTCTGGAGCGAAGCTGTTTTCACAATCTCA 4002422
Query 8753 AACCCCACGTCT--CCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGT 8810
|| || ||| || || || |||||||| |||||||| ||||||||||||| ||
Sbjct 4002423 AAGCCA--GTCGAGCCACCAAAAGTGCTGGGCTTCCAGTATTCCGGGGAGCAGATCGGGT 4002480
Query 8811 TCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGA 8870
| | | || ||||| ||||||||||| || || | ||| | |||||||| || || |
Sbjct 4002481 TTCCGAAAAGCCCTTTCAGGGAAAACGGGGCTCCAATCTCCACCATGCTCTCCCCAAAAA 4002540
Query 8871 TGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGT 8930
| | ||| || | || || | ||| || || | || ||||||| || | ||||
Sbjct 4002541 TAGAGTTTATCTGGCGTTTCTCAAGCAACAAACCAGGATAAAACTCCAAGGCATTAATGT 4002600
Query 8931 CTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975
|||| || || | || || || || | |||| ||||||||
Sbjct 4002601 CTCCATATAGCTCTTCCAGCTCCGCTGCTTTCTCCTCTTCTCCTG 4002645
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 707828718666800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |