Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03- 31] 78,595 sequences; 2,365,766,571 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq800 143 4e-29 seq45 123 4e-23 >seq800 Length=84292 Score = 143 bits (158), Expect = 4e-29 Identities = 212/300 (71%), Gaps = 4/300 (1%) Strand=Plus/Minus Query 8693 GGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATCCCA 8752 ||||| || || ||||| | |||| || ||| | | ||| | |||| || || Sbjct 67531 GGACAGCCCTTCACGTTATTGCAGATGAGCTTCTGTAGGGAGGCAGTATTGATTATTTCA 67472 Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812 || ||||| | |||||| |||||||| ||||||||||| | || || ||||| | || Sbjct 67471 AAGCCCACTTTTCCGCCAAAGGTGCTTGGTTTCCAGTACTCTGGAGAACAGATAGCATTT 67412 Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATG 8872 |||| || ||||| | || || || || || || || | ||| ||||||| |||||| Sbjct 67411 CCCATCAGCCCTTTCAAAGAGAATGGTGCTCCAAGTTCCACCATGGTCTCACCAAAGATG 67352 Query 8873 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCT 8932 || ||||| ||| |||| || | | || | ||||| ||||| ||| || |||||| Sbjct 67351 GCACCAGGACGAGGCCTTTCTACTAGAAGGCCAGGGTACAGCTCCATAGCATCAATGTCT 67292 Query 8933 CCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT----TTTATTAATAAA 8988 || ||||| | | ||| || || ||||| ||||||||||| ||||||||||| Sbjct 67291 CCATAAAGCTCTTCTAATTCAGCTGCCATTTCTTTTTCTCCTGTAATAATTATTAATAAA 67232 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 10025 TGTTCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCT 10084 || |||||||||||| || || |||| |||||||| || ||| ||| ||| | Sbjct 62904 TGATCTTACCCCATGGCCGAGAGCTTTGGTGAAGGCTGGCCCTTTGTGGTGATCTGTCTT 62845 Query 10085 AAAAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGG 10144 ||| |||||||| ||||||||||| |||| || | ||||| | || ||||| || || Sbjct 62844 AAAGAACTGGTGGGTGAAATGTTGAGCAAAGAACGTGAACATCATATTTGTGCCTTGAGG 62785 Query 10145 ATCGGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAG 10204 ||| ||| | || | ||| || ||| ||| |||||||| ||| | ||| || || Sbjct 62784 ATCAGGAATAAATTTTTTCCTCAGCAGAAATTTCTCCACAACTACTGCAGAATCTGGGAG 62725 Query 10205 AttttttttACCTG 10218 | || ||||||| Sbjct 62724 CTCCTTCTTACCTG 62711 Score = 95.1 bits (104), Expect = 2e-14 Identities = 166/242 (69%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681 ||||| | || || || || || || || ||| ||||||||||||| | | || || Sbjct 64323 ATGAGCCTGGTAGTTTGGAAAAGCTGCTCATCATTCCATTCTGGATGCACCTGCTTAAGG 64264 Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741 | || || || | |||||||| |||||||| || || || |||||||| | ||| || Sbjct 64263 ATGTCACAGACCCGATTGTGTTCTCTGAGCCATATTGTGGCATACATCATTAAACCTGGG 64204 Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801 |||| ||||| |||| | || |||| | ||| | | || || | || || Sbjct 64203 ACCAAACCAAACACCTCATTGCCTACAGAAAATTGCAGGTGCTTAGGAACATGAGGTGGG 64144 Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATC 9861 |||||||| | |||| || || || | ||| || |||||||| || ||||| ||| Sbjct 64143 TAGATCATTTCTGCCTGAGTGTCCTTCACAGTGGGAGGGTACATTTCTCCATCAATCATC 64084 Query 9862 TG 9863 || Sbjct 64083 TG 64082 >seq45 Length=7072151 Score = 123 bits (136), Expect = 4e-23 Identities = 167/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669 || ||||| | |||||| || | ||||| || || || ||||| ||||| ||||| Sbjct 4006970 TCACCGATGAGGATGAGGCGGGCTGTCTGGAAGAGCTGCTCGTCGCTCCACGTCGGATGC 4007029 Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729 || | ||||| || || || |||| |||||| || | |||||||| || || |||||| Sbjct 4007030 TCCTGCTTCAGCACGTCACAGACTCGGTTGTGCTCGCGAAGCCAGATGGTCGCATACATC 4007089 Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGC 9789 || || || |||| ||||||||| |||| || || |||||||| || | | | ||| Sbjct 4007090 ATTAGCCCCGGCAGCAGGCCAAACACCTCCTGGCCCACAGCCAGCTGCTTCTCCTTGGGG 4007149 Query 9790 ACTTCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATA 9842 ||| ||| ||||||||||| ||| | | | ||||| ||| ||||| Sbjct 4007150 GTGCCGGCAGGGTAGATCATGTGAACCGGAGCCTTGAGGACCGTGGGTGGATA 4007202 Score = 104 bits (114), Expect = 3e-17 Identities = 195/285 (68%), Gaps = 4/285 (1%) Strand=Plus/Plus Query 8693 GGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATCCCA 8752 ||||||| ||||||||| ||| || || ||||| | || | || || ||| || Sbjct 4002363 GGACACCGCTTGACGTTGAGACACACGAGCTTCTGGAGCGAAGCTGTTTTCACAATCTCA 4002422 Query 8753 AACCCCACGTCT--CCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGT 8810 || || ||| || || || |||||||| |||||||| ||||||||||||| || Sbjct 4002423 AAGCCA--GTCGAGCCACCAAAAGTGCTGGGCTTCCAGTATTCCGGGGAGCAGATCGGGT 4002480 Query 8811 TCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGA 8870 | | | || ||||| ||||||||||| || || | ||| | |||||||| || || | Sbjct 4002481 TTCCGAAAAGCCCTTTCAGGGAAAACGGGGCTCCAATCTCCACCATGCTCTCCCCAAAAA 4002540 Query 8871 TGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGT 8930 | | ||| || | || || | ||| || || | || ||||||| || | |||| Sbjct 4002541 TAGAGTTTATCTGGCGTTTCTCAAGCAACAAACCAGGATAAAACTCCAAGGCATTAATGT 4002600 Query 8931 CTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 |||| || || | || || || || | |||| |||||||| Sbjct 4002601 CTCCATATAGCTCTTCCAGCTCCGCTGCTTTCTCCTCTTCTCCTG 4002645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 707828718666800