Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03-
31] 78,595 sequences; 2,365,766,571 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq78549 111 2e-19
seq140 100 4e-16
seq135 84.2 3e-11
>seq78549
Length=11360908
Score = 111 bits (122), Expect = 2e-19
Identities = 97/121 (80%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385
|||| ||||| || || ||||| || ||||| |||||||| ||||||| || | ||| |
Sbjct 7628609 CCTCATCTCTGCTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAACCCTCTCTTCT 7628668
Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445
| | |||||| ||||| || || || ||||| |||||||||||||| ||||| ||||| |
Sbjct 7628669 TCAACCAAAAGATGGATGCAAAGGAGCCAGAGAAGAAGATTCCTTCCACTGCTGCAAAAG 7628728
Query 33446 C 33446
|
Sbjct 7628729 C 7628729
Score = 96.9 bits (106), Expect = 4e-15
Identities = 105/139 (76%), Gaps = 3/139 (2%)
Strand=Plus/Plus
Query 32957 TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTC---TTGAGACATAACTCCCATTT 33013
|||||||||| |||| |||| ||| |||||| || |||||||||||||| |
Sbjct 7626560 TTTAAAAGTCTGCATCCAAAGTGAAAGAGTTATCTGTGGATTTTGACATAACTCCCATCT 7626619
Query 33014 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTT 33073
| |||||||| || || || || || || || ||||| || ||||||| || ||||| |
Sbjct 7626620 TCTGGTATTCTCCTACTCGCTTCTCAAAGAAGTTAGTCTTGCCTTCCAGCGAGATATTCT 7626679
Query 33074 CCATGAAATCAAACGGATT 33092
|||| || ||||| |||||
Sbjct 7626680 CCATAAAGTCAAATGGATT 7626698
>seq140
Length=3053534
Score = 100 bits (110), Expect = 4e-16
Identities = 144/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 62571 CCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCA 62630
||| | || || |||||||| || | || | || |||||||| || | || || |||
Sbjct 12792 CCTTCGTAAGTTTCGTATGGGCCATGCTCTTTGGCGAGTTCACAGCTGGATTCCAAAGCA 12851
Query 62631 CCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAAT 62690
|||||||||||||| |||||||||| || || | || || || |||| |||||
Sbjct 12852 CCGTAATAAATGGTCTCGAAGATCTGCTGGTTCAACAACTGGGCCTCGGGGCTTTCAAAG 12911
Query 62691 GGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTA 62750
|| || | | || || ||||| ||||| | ||||| || ||||| ||||| || | |
Sbjct 12912 GGGTATCTCATCAGGATGAACGCATCCGCCAGACCTTGCACTCCAATGCCGATGGGACGA 12971
Query 62751 TGTCTCTTATTAGAGATTTCAGC 62773
|| | || || |||| |||||
Sbjct 12972 TGGCGTTTGTTGGAGAGCTCAGC 12994
>seq135
Length=2957239
Score = 84.2 bits (92), Expect = 3e-11
Identities = 76/96 (79%), Gaps = 0/96 (0%)
Strand=Plus/Minus
Query 33802 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATAA 33861
|| ||||| ||||||| || || || | ||||||||||||||||||||| || ||
Sbjct 2796812 ACCTCTTCTGCTGTCCAGAAGGAAGCTTGTGCCTTTTTATACATGTTCCATATATCCGGG 2796753
Query 33862 TATTGGATTGGGAAAATAACAAATCTATTTGGATTT 33897
||||||| |||||| || ||||||||| ||||||
Sbjct 2796752 TATTGGAGTGGGAAGATGACAAATCTACGAGGATTT 2796717
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622335193310200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |