Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03- 31] 78,595 sequences; 2,365,766,571 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq78549 111 2e-19 seq140 100 4e-16 seq135 84.2 3e-11 >seq78549 Length=11360908 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| ||||| || || ||||| || ||||| |||||||| ||||||| || | ||| | Sbjct 7628609 CCTCATCTCTGCTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAACCCTCTCTTCT 7628668 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | | |||||| ||||| || || || ||||| |||||||||||||| ||||| ||||| | Sbjct 7628669 TCAACCAAAAGATGGATGCAAAGGAGCCAGAGAAGAAGATTCCTTCCACTGCTGCAAAAG 7628728 Query 33446 C 33446 | Sbjct 7628729 C 7628729 Score = 96.9 bits (106), Expect = 4e-15 Identities = 105/139 (76%), Gaps = 3/139 (2%) Strand=Plus/Plus Query 32957 TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTC---TTGAGACATAACTCCCATTT 33013 |||||||||| |||| |||| ||| |||||| || |||||||||||||| | Sbjct 7626560 TTTAAAAGTCTGCATCCAAAGTGAAAGAGTTATCTGTGGATTTTGACATAACTCCCATCT 7626619 Query 33014 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTT 33073 | |||||||| || || || || || || || ||||| || ||||||| || ||||| | Sbjct 7626620 TCTGGTATTCTCCTACTCGCTTCTCAAAGAAGTTAGTCTTGCCTTCCAGCGAGATATTCT 7626679 Query 33074 CCATGAAATCAAACGGATT 33092 |||| || ||||| ||||| Sbjct 7626680 CCATAAAGTCAAATGGATT 7626698 >seq140 Length=3053534 Score = 100 bits (110), Expect = 4e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 62571 CCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCA 62630 ||| | || || |||||||| || | || | || |||||||| || | || || ||| Sbjct 12792 CCTTCGTAAGTTTCGTATGGGCCATGCTCTTTGGCGAGTTCACAGCTGGATTCCAAAGCA 12851 Query 62631 CCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAAT 62690 |||||||||||||| |||||||||| || || | || || || |||| ||||| Sbjct 12852 CCGTAATAAATGGTCTCGAAGATCTGCTGGTTCAACAACTGGGCCTCGGGGCTTTCAAAG 12911 Query 62691 GGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTA 62750 || || | | || || ||||| ||||| | ||||| || ||||| ||||| || | | Sbjct 12912 GGGTATCTCATCAGGATGAACGCATCCGCCAGACCTTGCACTCCAATGCCGATGGGACGA 12971 Query 62751 TGTCTCTTATTAGAGATTTCAGC 62773 || | || || |||| ||||| Sbjct 12972 TGGCGTTTGTTGGAGAGCTCAGC 12994 >seq135 Length=2957239 Score = 84.2 bits (92), Expect = 3e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 33802 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATAA 33861 || ||||| ||||||| || || || | ||||||||||||||||||||| || || Sbjct 2796812 ACCTCTTCTGCTGTCCAGAAGGAAGCTTGTGCCTTTTTATACATGTTCCATATATCCGGG 2796753 Query 33862 TATTGGATTGGGAAAATAACAAATCTATTTGGATTT 33897 ||||||| |||||| || ||||||||| |||||| Sbjct 2796752 TATTGGAGTGGGAAGATGACAAATCTACGAGGATTT 2796717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622335193310200