Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03- 31] 78,595 sequences; 2,365,766,571 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq78565 113 4e-20 seq192 96.9 3e-15 >seq78565 Length=14964121 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 |||||||| | ||||| ||||| || || || ||| | |||||| | ||| |||| | Sbjct 6183748 AAAATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTGGAAGTAGAGCCC 6183807 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 | ||||||||| ||| | ||||| || || ||||||||||| || ||||| || Sbjct 6183808 AGCGACACCATTGAGAATGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGAC 6183867 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || || || || || | | ||| || || || ||||||| | | | | |||||| Sbjct 6183868 CAGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTAC 6183927 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||| || |||||||| ||| | || |||||||| | || |||| || Sbjct 6183928 AACATCCAGAAAGAATCCACTCTGCACTTGGTCCTGCGCCTCCGAGGTGG 6183977 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| ||||| || || || ||| | |||||| | ||| |||| | | | Sbjct 6183979 ATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAAGTAGAGCCCAGC 6184038 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| ||| | ||||| || || ||||||||||| || ||||| || || Sbjct 6184039 GACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCAGACCAG 6184098 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || || || | | ||| || || || ||||||| | | | | |||||| ||| Sbjct 6184099 CAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 6184158 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || |||||||| ||| | || |||||||| | || |||| || Sbjct 6184159 ATCCAGAAAGAATCCACTCTGCACTTGGTCCTGCGCCTCCGAGGTGG 6184205 Score = 107 bits (118), Expect = 2e-18 Identities = 158/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| ||||| || || || ||| | |||||| | || |||| | | | Sbjct 6184207 ATGCAGATCTTTGTGAAAACCTTGACGGGCAAAACCATCACCCTAGAGGTAGAGCCCAGC 6184266 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| ||| | |||||| || || ||||||||||| || ||||| || || Sbjct 6184267 GACACCATTGAGAATGTCAAAGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGACCAG 6184326 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || || || | | ||| || || || ||||||| | | | | |||||| ||| Sbjct 6184327 CAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 6184386 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGG 26992 || || |||||||| ||| | || |||||||| | || |||| Sbjct 6184387 ATCCAGAAAGAATCCACTCTGCACTTGGTCCTGCGCCTCCGAGG 6184430 >seq192 Length=2129425 Score = 96.9 bits (106), Expect = 3e-15 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 71717 GAGGGTAAAATTCACGGATACCTACGCATGTACTGGGCCAAAAAGATTCTCGAGTGGACT 71776 ||||| || || ||||| | ||||||||||||||||||||| || || || |||||||| Sbjct 1858479 GAGGGGAAGATGCACGGGTTCCTACGCATGTACTGGGCCAAGAAAATCCTGGAGTGGACC 1858420 Query 71777 CAAACTCCCGAGCAGGCGCTCGAGTATTCTATTTATCTAAACGATAGATACAGTCTCGAC 71836 | | |||||| |||| || |||| | || || || |||||| | || || || Sbjct 1858419 CGCTCCCCCGAGGAGGCCCTGGAGTTCACCATCTACCTCAACGATCGCTATGAACTGGAT 1858360 Query 71837 GGTCGCGATCCTAACGGTTATGTCGGTT 71864 || || ||||| | ||| ||||| |||| Sbjct 1858359 GGCCGGGATCCCAGCGGCTATGTAGGTT 1858332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478192144108400