Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03-
31] 78,595 sequences; 2,365,766,571 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq140 96.9 4e-15
seq78549 82.4 1e-10
seq135 82.4 1e-10
>seq140
Length=3053534
Score = 96.9 bits (106), Expect = 4e-15
Identities = 143/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 62426 CCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCA 62485
||| | || || |||||||| || | || | || |||||||| || | || || |||
Sbjct 12792 CCTTCGTAAGTTTCGTATGGGCCATGCTCTTTGGCGAGTTCACAGCTGGATTCCAAAGCA 12851
Query 62486 CCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAAT 62545
|||||||||||||| |||||||||| || || | || || || |||| |||||
Sbjct 12852 CCGTAATAAATGGTCTCGAAGATCTGCTGGTTCAACAACTGGGCCTCGGGGCTTTCAAAG 12911
Query 62546 GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTA 62605
|| || | | || || ||||| || || | ||||| || ||||| ||||| || | |
Sbjct 12912 GGGTATCTCATCAGGATGAACGCATCCGCCAGACCTTGCACTCCAATGCCGATGGGACGA 12971
Query 62606 TGTCTCTTATTAGAGATTTCAGC 62628
|| | || || |||| |||||
Sbjct 12972 TGGCGTTTGTTGGAGAGCTCAGC 12994
Score = 96.9 bits (106), Expect = 4e-15
Identities = 121/166 (73%), Gaps = 0/166 (0%)
Strand=Plus/Plus
Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869
|||| || | ||| || ||||||||||| | || || || || || || || ||||| |
Sbjct 26182 CACTGAACACTTTCTTGGTTTCTTTGTGCAAGTTGGAGACCGCGATCCTTGCTGCTAGGA 26241
Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929
||||||| || || || | ||||| || || ||| | || || ||||| || ||||
Sbjct 26242 TGGCATAGTCGGGGTGCTTGGTAGTGAGGGTTGCGGCTGTCTCAGCAGCCAGTGTATCCA 26301
Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCAT 63975
||| || ||||| |||||| | || | || ||||| ||||||||
Sbjct 26302 GTTCCACAGTTGTGACACCACTGTACAGACCCTGGATCACCTTCAT 26347
>seq78549
Length=11360908
Score = 82.4 bits (90), Expect = 1e-10
Identities = 102/139 (73%), Gaps = 3/139 (2%)
Strand=Plus/Plus
Query 32314 TTTAAAAGTCAACATCTAGAGAAAAATGATTGTCTTC---TTGAGACATAACTCCCATTT 32370
|||||||||| |||| | || ||| || ||| || |||||||||||||| |
Sbjct 7626560 TTTAAAAGTCTGCATCCAAAGTGAAAGAGTTATCTGTGGATTTTGACATAACTCCCATCT 7626619
Query 32371 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTT 32430
| |||||||| || || || || || || || ||||| || ||||| | || ||||| |
Sbjct 7626620 TCTGGTATTCTCCTACTCGCTTCTCAAAGAAGTTAGTCTTGCCTTCCAGCGAGATATTCT 7626679
Query 32431 CCATGAAATCGAATGGATT 32449
|||| || || ||||||||
Sbjct 7626680 CCATAAAGTCAAATGGATT 7626698
>seq135
Length=2957239
Score = 82.4 bits (90), Expect = 1e-10
Identities = 78/100 (78%), Gaps = 0/100 (0%)
Strand=Plus/Minus
Query 33158 CACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 33217
||| ||||| ||||||| || || || | ||||||||||||||| ||||| || || |
Sbjct 2796813 CACCTCTTCTGCTGTCCAGAAGGAAGCTTGTGCCTTTTTATACATGTTCCATATATCCGG 2796754
Query 33218 ATATTGAATTGGAAAAATAACAAATCTATTTGGATTTTTT 33257
||||| | ||| || || ||||||||| |||||||||
Sbjct 2796753 GTATTGGAGTGGGAAGATGACAAATCTACGAGGATTTTTT 2796714
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633009496162000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |