Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03- 31] 78,595 sequences; 2,365,766,571 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq140 96.9 4e-15 seq78549 82.4 1e-10 seq135 82.4 1e-10 >seq140 Length=3053534 Score = 96.9 bits (106), Expect = 4e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 62426 CCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCA 62485 ||| | || || |||||||| || | || | || |||||||| || | || || ||| Sbjct 12792 CCTTCGTAAGTTTCGTATGGGCCATGCTCTTTGGCGAGTTCACAGCTGGATTCCAAAGCA 12851 Query 62486 CCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAAT 62545 |||||||||||||| |||||||||| || || | || || || |||| ||||| Sbjct 12852 CCGTAATAAATGGTCTCGAAGATCTGCTGGTTCAACAACTGGGCCTCGGGGCTTTCAAAG 12911 Query 62546 GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTA 62605 || || | | || || ||||| || || | ||||| || ||||| ||||| || | | Sbjct 12912 GGGTATCTCATCAGGATGAACGCATCCGCCAGACCTTGCACTCCAATGCCGATGGGACGA 12971 Query 62606 TGTCTCTTATTAGAGATTTCAGC 62628 || | || || |||| ||||| Sbjct 12972 TGGCGTTTGTTGGAGAGCTCAGC 12994 Score = 96.9 bits (106), Expect = 4e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869 |||| || | ||| || ||||||||||| | || || || || || || || ||||| | Sbjct 26182 CACTGAACACTTTCTTGGTTTCTTTGTGCAAGTTGGAGACCGCGATCCTTGCTGCTAGGA 26241 Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929 ||||||| || || || | ||||| || || ||| | || || ||||| || |||| Sbjct 26242 TGGCATAGTCGGGGTGCTTGGTAGTGAGGGTTGCGGCTGTCTCAGCAGCCAGTGTATCCA 26301 Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCAT 63975 ||| || ||||| |||||| | || | || ||||| |||||||| Sbjct 26302 GTTCCACAGTTGTGACACCACTGTACAGACCCTGGATCACCTTCAT 26347 >seq78549 Length=11360908 Score = 82.4 bits (90), Expect = 1e-10 Identities = 102/139 (73%), Gaps = 3/139 (2%) Strand=Plus/Plus Query 32314 TTTAAAAGTCAACATCTAGAGAAAAATGATTGTCTTC---TTGAGACATAACTCCCATTT 32370 |||||||||| |||| | || ||| || ||| || |||||||||||||| | Sbjct 7626560 TTTAAAAGTCTGCATCCAAAGTGAAAGAGTTATCTGTGGATTTTGACATAACTCCCATCT 7626619 Query 32371 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTT 32430 | |||||||| || || || || || || || ||||| || ||||| | || ||||| | Sbjct 7626620 TCTGGTATTCTCCTACTCGCTTCTCAAAGAAGTTAGTCTTGCCTTCCAGCGAGATATTCT 7626679 Query 32431 CCATGAAATCGAATGGATT 32449 |||| || || |||||||| Sbjct 7626680 CCATAAAGTCAAATGGATT 7626698 >seq135 Length=2957239 Score = 82.4 bits (90), Expect = 1e-10 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 33158 CACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 33217 ||| ||||| ||||||| || || || | ||||||||||||||| ||||| || || | Sbjct 2796813 CACCTCTTCTGCTGTCCAGAAGGAAGCTTGTGCCTTTTTATACATGTTCCATATATCCGG 2796754 Query 33218 ATATTGAATTGGAAAAATAACAAATCTATTTGGATTTTTT 33257 ||||| | ||| || || ||||||||| ||||||||| Sbjct 2796753 GTATTGGAGTGGGAAGATGACAAATCTACGAGGATTTTTT 2796714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633009496162000