Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03-
31] 78,595 sequences; 2,365,766,571 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq78565 199 7e-46
seq39 154 3e-32
seq96 102 2e-16
>seq78565
Length=14964121
Score = 199 bits (220), Expect = 7e-46
Identities = 183/229 (80%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || ||||||| |||||||| || ||||| ||||| |||||||| || |||||
Sbjct 6183977 CCACCTCGGAGGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGAC 6183918
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||||||| | |||||| ||||| || || || || || ||||| || |||
Sbjct 6183917 AGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGA 6183858
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGAT-TCTAC 68413
|||||||| |||||||| || || |||||||| ||| |||||||| |||| |||||
Sbjct 6183857 ATGCCTTCTTTGTCTTGGATTTTGGCCTTGACATTCTCAATGGTGTC-GCTGGGCTCTAC 6183799
Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462
||||| |||||||||||| ||||| | ||| || || || |||||||||
Sbjct 6183798 TTCCAGGGTGATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCATT 6183750
Score = 188 bits (208), Expect = 1e-42
Identities = 180/228 (79%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || ||||||| |||||||| || ||||| ||||| |||||||| || |||||
Sbjct 6184205 CCACCTCGGAGGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGAC 6184146
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||||||| | |||||| ||||| || || || || || ||||| || |||
Sbjct 6184145 AGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGA 6184086
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGAT-TCTAC 68413
|||||||| ||||| || || || |||||||| ||| |||||||| |||| |||||
Sbjct 6184085 ATGCCTTCTTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTC-GCTGGGCTCTAC 6184027
Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||| | |||||||||||| ||||| | ||| || || || ||||||||
Sbjct 6184026 TTCTAGGGTGATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 6183979
Score = 183 bits (202), Expect = 6e-41
Identities = 177/225 (79%), Gaps = 2/225 (1%)
Strand=Plus/Minus
Query 68238 CCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGT 68297
|| || ||||||| |||||||| || ||||| ||||| |||||||| || ||||| ||
Sbjct 6184430 CCTCGGAGGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGG 6184371
Query 68298 GTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATG 68357
|| | ||||||||| | |||||| ||||| || || || || || ||||| || ||||||
Sbjct 6184370 GTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATG 6184311
Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGAT-TCTACTTC 68416
||||| |||||||| || || || ||||| ||| |||||||| |||| ||||| ||
Sbjct 6184310 CCTTCTTTGTCTTGGATTTTGGCTTTGACATTCTCAATGGTGTC-GCTGGGCTCTACCTC 6184252
Query 68417 CAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
| |||||||||||| ||||| | ||| || || || ||||||||
Sbjct 6184251 TAGGGTGATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 6184207
>seq39
Length=8077485
Score = 154 bits (170), Expect = 3e-32
Identities = 165/218 (76%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303
|| ||||| || | ||| ||||||||||| || |||||||| || || || || || |
Sbjct 4823157 AGACGCAACACAAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCAGATAGGGTGCGG 4823216
Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363
|||||||| | |||||| || || || || || || || ||||| ||||| ||||||||
Sbjct 4823217 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCT 4823276
Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423
||||| || ||||| |||||||| ||| || ||||| | || || || | ||||
Sbjct 4823277 TTGTCCTGGATCTTAGCCTTGACATTCTCAATAGTGTCACTGGGCTCAACCTCTAGGGTG 4823336
Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||||| || || || |||||||| || || ||||||||
Sbjct 4823337 ATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 4823374
>seq96
Length=4257890
Score = 102 bits (112), Expect = 2e-16
Identities = 87/105 (83%), Gaps = 2/105 (2%)
Strand=Plus/Plus
Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTC 68416
|| |||||||| || ||||| |||||||| |||||||||||| ||| | || || ||
Sbjct 2450199 CCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTC-GCTGGGCTCCACCTC 2450257
Query 68417 CAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||||||||||||||| ||||| ||||| || ||||| ||||||||
Sbjct 2450258 CAAGGTGATGGTTTTGCCCGTCAGGGTTTTCACGAAGATCTGCAT 2450302
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 920716963593400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |