Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03-
31] 78,595 sequences; 2,365,766,571 total letters
Query= NC_009011.2
Length=131331
Score E
Sequences producing significant alignments: (Bits) Value
seq78565 122 7e-23
seq39 87.8 2e-12
>seq78565
Length=14964121
Score = 122 bits (134), Expect = 7e-23
Identities = 165/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| || || || | || || || || | || |||||||| || |||||||| |||
Sbjct 6183980 ATACCACCTCGGAGGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCG 6183921
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
|| || || |||||| || || || || || |||| || | ||| ||||| |||
Sbjct 6183920 GACAGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGA 6183861
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
||||||||||||||||| || || || | | |||| ||||||| ||| ||
Sbjct 6183860 GGAATGCCTTCTTTGTCTTGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCT 6183801
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| |||| ||| | |||||||| |||| ||||| ||||| ||||||||
Sbjct 6183800 ACTTCCAGGGTGATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 6183751
Score = 118 bits (130), Expect = 9e-22
Identities = 164/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| || || || | || || || || | || |||||||| || |||||||| |||
Sbjct 6184208 ATACCACCTCGGAGGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCG 6184149
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
|| || || |||||| || || || || || |||| || | ||| ||||| |||
Sbjct 6184148 GACAGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGA 6184089
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
||||||||||||||||| || || || | | |||| ||||||| ||| ||
Sbjct 6184088 GGAATGCCTTCTTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCT 6184029
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| || | ||| | |||||||| |||| ||||| ||||| ||||||||
Sbjct 6184028 ACTTCTAGGGTGATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 6183979
Score = 116 bits (128), Expect = 3e-21
Identities = 144/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245
|| |||||||| || |||||||| ||| || || || |||||| || || || ||
Sbjct 6184403 GTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGCTTTCCG 6184344
Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305
|| |||| || | ||| ||||| |||||||||||||||||||| || || |||
Sbjct 6184343 GCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCTTGGATTTTGGCTTTG 6184284
Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365
| | |||| ||||||| ||| || || || | ||| | |||||||| |||| |||
Sbjct 6184283 ACATTCTCAATGGTGTCGCTGGGCTCTACCTCTAGGGTGATGGTTTTGCCCGTCAAGGTT 6184224
Query 114366 TTTACAAAAATCTGCAT 114382
|| ||||| ||||||||
Sbjct 6184223 TTCACAAAGATCTGCAT 6184207
>seq39
Length=8077485
Score = 87.8 bits (96), Expect = 2e-12
Identities = 138/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245
|| || || || || |||||||| || || || || |||||| || || || |||
Sbjct 4823406 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCA 4823465
Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305
|| |||| || | ||| ||||| || || |||||||||||||| ||||| ||
Sbjct 4823466 GCAAAGATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCTTTGTCCTGGATCTTAGCCTTG 4823525
Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365
| | |||| ||||| ||| || || || | ||| | || ||||| ||||| ||
Sbjct 4823526 ACATTCTCAATAGTGTCACTGGGCTCAACCTCTAGGGTGATGGTCTTGCCAGTCAGGGTC 4823585
Query 114366 TTTACAAAAATCTGCATG 114383
|| ||||| |||||||||
Sbjct 4823586 TTCACAAAGATCTGCATG 4823603
Score = 82.4 bits (90), Expect = 6e-11
Identities = 137/198 (69%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 114185 CGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACC 114244
||| || || || || |||||||| || | || || |||||| || || || ||
Sbjct 4823177 CGTGGACTCCTTCTGGATGTTGTAGTCAGATAGGGTGCGGCCATCTTCCAGCTGCTTGCC 4823236
Query 114245 AGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTT 114304
||| |||| || | ||| ||||| || || |||||||||||||| ||||| ||
Sbjct 4823237 AGCAAAGATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCTTTGTCCTGGATCTTAGCCTT 4823296
Query 114305 TAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364
| | |||| ||||| ||| || || || | ||| | || ||||| ||||| ||
Sbjct 4823297 GACATTCTCAATAGTGTCACTGGGCTCAACCTCTAGGGTGATGGTCTTGCCAGTCAGGGT 4823356
Query 114365 TTTTACAAAAATCTGCAT 114382
|| ||||| ||||||||
Sbjct 4823357 CTTCACAAAGATCTGCAT 4823374
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419731963105140
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |