Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03- 31] 78,595 sequences; 2,365,766,571 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq78565 122 7e-23 seq39 87.8 2e-12 >seq78565 Length=14964121 Score = 122 bits (134), Expect = 7e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || || | || || || || | || |||||||| || |||||||| ||| Sbjct 6183980 ATACCACCTCGGAGGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCG 6183921 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || |||||| || || || || || |||| || | ||| ||||| ||| Sbjct 6183920 GACAGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGA 6183861 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||||||||| || || || | | |||| ||||||| ||| || Sbjct 6183860 GGAATGCCTTCTTTGTCTTGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCT 6183801 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | |||||||| |||| ||||| ||||| |||||||| Sbjct 6183800 ACTTCCAGGGTGATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 6183751 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || || | || || || || | || |||||||| || |||||||| ||| Sbjct 6184208 ATACCACCTCGGAGGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCG 6184149 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || |||||| || || || || || |||| || | ||| ||||| ||| Sbjct 6184148 GACAGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGA 6184089 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||||||||| || || || | | |||| ||||||| ||| || Sbjct 6184088 GGAATGCCTTCTTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCT 6184029 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | |||||||| |||| ||||| ||||| |||||||| Sbjct 6184028 ACTTCTAGGGTGATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 6183979 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || |||||||| || |||||||| ||| || || || |||||| || || || || Sbjct 6184403 GTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGCTTTCCG 6184344 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| ||||| |||||||||||||||||||| || || ||| Sbjct 6184343 GCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCTTGGATTTTGGCTTTG 6184284 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||||| ||| || || || | ||| | |||||||| |||| ||| Sbjct 6184283 ACATTCTCAATGGTGTCGCTGGGCTCTACCTCTAGGGTGATGGTTTTGCCCGTCAAGGTT 6184224 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 6184223 TTCACAAAGATCTGCAT 6184207 >seq39 Length=8077485 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| || || || || |||||| || || || ||| Sbjct 4823406 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCA 4823465 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| ||||| || || |||||||||||||| ||||| || Sbjct 4823466 GCAAAGATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCTTTGTCCTGGATCTTAGCCTTG 4823525 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||| ||| || || || | ||| | || ||||| ||||| || Sbjct 4823526 ACATTCTCAATAGTGTCACTGGGCTCAACCTCTAGGGTGATGGTCTTGCCAGTCAGGGTC 4823585 Query 114366 TTTACAAAAATCTGCATG 114383 || ||||| ||||||||| Sbjct 4823586 TTCACAAAGATCTGCATG 4823603 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 114185 CGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACC 114244 ||| || || || || |||||||| || | || || |||||| || || || || Sbjct 4823177 CGTGGACTCCTTCTGGATGTTGTAGTCAGATAGGGTGCGGCCATCTTCCAGCTGCTTGCC 4823236 Query 114245 AGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTT 114304 ||| |||| || | ||| ||||| || || |||||||||||||| ||||| || Sbjct 4823237 AGCAAAGATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCTTTGTCCTGGATCTTAGCCTT 4823296 Query 114305 TAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | | |||| ||||| ||| || || || | ||| | || ||||| ||||| || Sbjct 4823297 GACATTCTCAATAGTGTCACTGGGCTCAACCTCTAGGGTGATGGTCTTGCCAGTCAGGGT 4823356 Query 114365 TTTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 4823357 CTTCACAAAGATCTGCAT 4823374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419731963105140