Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03- 31] 78,595 sequences; 2,365,766,571 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq140 114 2e-20 seq78549 102 2e-16 seq135 87.8 3e-12 >seq140 Length=3053534 Score = 114 bits (126), Expect = 2e-20 Identities = 113/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 245003 ACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGC 245062 |||| | ||||||||| ||||| ||||||||||| |||||||||||||| | |||| Sbjct 17334 ACCCGTTTCATGAAGAGATCGGGAATCCAGAGGGCAAAGAAGAGGTCCCTGGCTCGCTGC 17393 Query 245063 TCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGC 245122 || ||| || ||||||||| |||| || | ||| ||||| | ||| | |||||| ||| Sbjct 17394 TCCTCCTTCCCGGTGTTCTTCTTCAGGTCAAGAAACTCAAAAATGTCCAAGTGCCAAGGC 17453 Query 245123 TCCATGTAGACAGCGAGGGCGCCGGG 245148 || | ||||| || | ||| ||||| Sbjct 17454 TCAAGGTAGATGGCAAAGGCCCCGGG 17479 Score = 93.3 bits (102), Expect = 8e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 244704 CCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGG 244763 ||||||| || | ||||||||| || || || ||||| ||||| ||||||||||||| Sbjct 15606 CCACCTCGTCTTTGCTGGTGTACTCCACTATTTCTGTGCACAGGTTGCTGCACTTGATGG 15665 Query 244764 TGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCC 244823 | ||||||| ||| || ||| || || || | ||||||||| |||||| | || Sbjct 15666 TTCCCAGGTTCTGCTGGTTGCTTTTCCTATTACAAGAGTCCTTGTACAGCATGTAAGGTG 15725 Query 244824 CCCCGGTCTCG 244834 |||||||||| Sbjct 15726 TCCCGGTCTCG 15736 Score = 87.8 bits (96), Expect = 3e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 244322 CCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTG-GGCCAGCTT 244380 || |||||||| |||| ||| ||||| || ||| || || | || || ||| || | Sbjct 12774 CCTTTGCTGACAGGGCAGCCTTCGTAAGTTTCGTATGGGCCAT-GCTCTTTGGCGAGTTC 12832 Query 244381 ACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCG 244440 |||||| || | || |||| || ||||||||||||||| || ||||| | Sbjct 12833 ACAGCTGGATTCCAAAGCACCGTAATAAATGGTCTCGAAGATCTGCTGGTTCAACAACTG 12892 Query 244441 GGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCAC 244500 ||||| | || |||||| | ||||| ||||| | || ||||| || ||||| Sbjct 12893 GGCCTCGGGGCTTTCAAAGGGGTATCTCATCAGGATGAACGCATCCGCCAGACCTTGCAC 12952 Query 244501 GCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGC 244537 || ||||||||||| | || || ||||||||| || Sbjct 12953 TCCAATGCCGATGGGACGATGGCGTTTGTTGGAGAGC 12989 >seq78549 Length=11360908 Score = 102 bits (112), Expect = 2e-16 Identities = 97/124 (78%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767 ||||| ||| | || || || || ||||||||||| ||| |||| || |||||||| ||| Sbjct 7628732 GTAGCTTTTGCAGCAGTGGAAGGAATCTTCTTCTCTGGCTCCTTTGCATCCATCTTTTGG 7628673 Query 42768 CTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGAC 42827 | ||| ||| | || ||||| |||||||| || || || |||||||||||||| || Sbjct 7628672 TTGAAGAAGAGAGGGTTAATGCCTGGACTCACTTTTTCTAATGAACTCATCAGCAGAGAT 7628613 Query 42828 GAGG 42831 |||| Sbjct 7628612 GAGG 7628609 >seq135 Length=2957239 Score = 87.8 bits (96), Expect = 3e-12 Identities = 103/137 (75%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||||| |||| |||||| |||| || || || ||||||||||| || | || || Sbjct 2808901 GGGGAGAGAGTGGTTGCCTTTGCCGCAGTGGAAGGGATCTTCTTCTCAGGTTCTTTTGCT 2808960 Query 42756 TCCATCTTCTGGCTCAAGCAGAAGGTGTC-GATGCCCGGACTCACCTTCTCGAACGAACT 42814 | || || ||||| ||| || ||| ||| |||||| ||||| || ||||| || || || Sbjct 2808961 GCTATTTTTTGGCTGAAGAAG-AGGGGTCTGATGCCTGGACTGACATTCTCCAATGAGCT 2809019 Query 42815 CATCAGCAGGGACGAGG 42831 ||| ||| | || |||| Sbjct 2809020 CATTAGCCGAGATGAGG 2809036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943411445757200