Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03- 31] 78,595 sequences; 2,365,766,571 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq78565 107 2e-18 seq36374 96.9 4e-15 seq76458 89.7 6e-13 seq32725 89.7 6e-13 seq78529 87.8 2e-12 seq2285 86.0 7e-12 seq925 86.0 7e-12 seq16958 82.4 8e-11 seq1106 82.4 8e-11 seq81 82.4 8e-11 >seq78565 Length=14964121 Score = 107 bits (118), Expect = 2e-18 Identities = 163/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| |||| | |||| ||||| |||| ||| || || || || ||||| || | Sbjct 6183978 ACCACCTCGGAGGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGA 6183919 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||| || ||| | || || |||||||| || || || || || | ||||||||| | || Sbjct 6183918 CAGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGG 6183859 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | || || ||||| |||||| |||| || | | |||||||| | || || Sbjct 6183858 AATGCCTTCTTTGTCTTGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTAC 6183799 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTC 42212 || | ||||||||||||||||| | || || |||||||| ||||||||| Sbjct 6183798 TTCCAGGGTGATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCATTTTC 6183747 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| |||| | |||| ||||| |||| ||| || || || || ||||| || | Sbjct 6184206 ACCACCTCGGAGGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGA 6184147 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||| || ||| | || || |||||||| || || || || || | ||||||||| | || Sbjct 6184146 CAGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGG 6184087 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | || || |||||| |||||| |||| || | | |||||||| | || || Sbjct 6184086 AATGCCTTCTTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTAC 6184027 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | ||||||||||||||||| | || || |||||||| ||||| Sbjct 6184026 TTCTAGGGTGATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 6183979 Score = 104 bits (114), Expect = 3e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||| ||||| |||| ||| || || || || ||||| || | ||| || ||| | Sbjct 6184421 CGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCA 6184362 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || |||||||| || || || || || | ||||||||| | || | || || ||| Sbjct 6184361 TCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTG 6184302 Query 42114 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 42173 || |||||| ||||| || | | |||||||| | || || || | |||||| Sbjct 6184301 TCTTGGATTTTGGCTTTGACATTCTCAATGGTGTCGCTGGGCTCTACCTCTAGGGTGATG 6184242 Query 42174 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||||||||| | || || |||||||| ||||| Sbjct 6184241 GTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 6184207 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 6172514 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 6172455 Query 57067 TACTACCGAGGAT 57079 ||||| ||||||| Sbjct 6172454 TACTAACGAGGAT 6172442 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 6176873 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 6176814 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 6176813 TACTAACGAGGA 6176802 >seq36374 Length=840 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || || | |||||||||||||||||||||||||||||||| |||||| ||||| Sbjct 262 TCTCCCCGTCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGGGATACTCCCCACT 203 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 202 ATACTAACGAGGA 190 >seq76458 Length=506 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 186 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 127 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 126 TACTAACGAGGA 115 >seq32725 Length=905 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 320 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 379 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 380 TACTAACGAGGA 391 >seq78529 Length=6346059 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 1850392 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 1850333 Query 57067 TACTACCGAGGAT 57079 ||||| ||||||| Sbjct 1850332 TACTAACGAGGAT 1850320 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 3554879 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 3554938 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 3554939 TACTAACGAGGA 3554950 >seq2285 Length=18801 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||| ||||||||||||| ||||||||||||| Sbjct 18643 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCTGCGTGACAGGCGGGGATACTCACCACTA 18702 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 18703 TACTAACGAGGA 18714 >seq925 Length=74835 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| |||||||||| |||||||||| ||||||||||||| Sbjct 60751 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCTTGACAGGCGGGGATACTCACCACTA 60692 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 60691 TACTAACGAGGA 60680 >seq16958 Length=887 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||||||||||||||||||| |||||||||| | |||||||||||| Sbjct 262 TCTCCCCGTCGGGGAATCGAACCCTGGTCTCCCACGTGACAGGCAGGGATACTCACCACT 203 Query 57066 ATACTACCGAGGA 57078 |||||| | |||| Sbjct 202 ATACTAACAAGGA 190 >seq1106 Length=51910 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||||||||||||||||||| |||||||||| | |||||||||||| Sbjct 4522 TCTCCCCGTCGGGGAATCGAACCCTGGTCTCCCACGTGACAGGCAGGGATACTCACCACT 4581 Query 57066 ATACTACCGAGGA 57078 |||||| | |||| Sbjct 4582 ATACTAACAAGGA 4594 >seq81 Length=4821437 Score = 82.4 bits (90), Expect = 8e-11 Identities = 53/58 (91%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGG 57077 ||||||||||||||||||||||||||||| || |||||||||||||||||| |||| Sbjct 917671 AATCGAACCCTGGTCTCCCGCGTGACAGGTGGGGATACTCACCACTATACTAATGAGG 917728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542679127374800