Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03- 31] 78,595 sequences; 2,365,766,571 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq78565 102 8e-17 seq140 82.4 8e-11 seq39 82.4 8e-11 >seq78565 Length=14964121 Score = 102 bits (112), Expect = 8e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || || || || |||||||||||| || || ||| || || || || || |||| | Sbjct 6184400 GATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCA 6184341 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||| ||||| ||||| || ||||||||||| |||||| ||| | Sbjct 6184340 AAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCTTGGATTTTGGCTTTGACA 6184281 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||||| | | ||| ||||| | || | ||||| || |||| ||||| Sbjct 6184280 TTCTCAATGGTGTCGCTGGGCTCTACCTCTAGGGTGATGGTTTTGCCCGTCAAGGTTTTC 6184221 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 6184220 ACAAAGATCTGCAT 6184207 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| | |||| || || || | | || || || || |||||||||||| | Sbjct 6183977 CCACCTCGGAGGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGAC 6183918 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || ||| || || || || || |||| | |||| || | ||| ||||| ||||| Sbjct 6183917 AGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGA 6183858 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||||||||| |||||| || | | || | ||||||| | | ||| || Sbjct 6183857 ATGCCTTCTTTGTCTTGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACT 6183798 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||| || |||| ||||| ||||| |||||||| Sbjct 6183797 TCCAGGGTGATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 6183751 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| | |||| || || || | | || || || || |||||||||||| | Sbjct 6184205 CCACCTCGGAGGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGAC 6184146 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || ||| || || || || || |||| | |||| || | ||| ||||| ||||| Sbjct 6184145 AGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGA 6184086 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||||||||| |||||| || | | || | ||||||| | | ||| || Sbjct 6184085 ATGCCTTCTTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACT 6184026 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||| || |||| ||||| ||||| |||||||| Sbjct 6184025 TCTAGGGTGATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 6183979 >seq140 Length=3053534 Score = 82.4 bits (90), Expect = 8e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 153640 TGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGAT 153699 |||||| ||| || || | ||| ||||||||||| || ||| |||| || ||||| | Sbjct 15624 TGTACTCCACTATTTCTGTGCACAGGTTGCTGCACTTGATGGTTCCCAGGTTCTGCTGGT 15683 Query 153700 TGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCG 153752 ||||||| | ||| || | ||| ||| | |||||||| ||| ||||||||| Sbjct 15684 TGCTTTTCCTATTACAAGAGTCCTTGTACAGCATGTAAGGTGTCCCGGTCTCG 15736 >seq39 Length=8077485 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| || ||||| || | || | | | |||||||| || ||||||||||| | Sbjct 4823376 CCACCTCTCAGACGCAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 4823435 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || || || || || | | |||| || | ||| ||||| || || Sbjct 4823436 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGTGGG 4823495 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||||||||| ||| || || | | || | ||||| | | ||| ||| Sbjct 4823496 ATGCCTTCTTTGTCCTGGATCTTAGCCTTGACATTCTCAATAGTGTCACTGGGCTCAACC 4823555 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | || | || || |||||||| || || ||||| ||||||||| Sbjct 4823556 TCTAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 4823603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495774853208400