Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03- 31] 78,595 sequences; 2,365,766,571 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq800 149 9e-31 seq45 87.8 3e-12 >seq800 Length=84292 Score = 149 bits (164), Expect = 9e-31 Identities = 202/282 (72%), Gaps = 0/282 (0%) Strand=Plus/Minus Query 8894 GGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATGTCT 8953 ||||| |||||||| || || ||||| ||| | || || || || | || || Sbjct 67531 GGACAGCCCTTCACGTTATTGCAGATGAGCTTCTGTAGGGAGGCAGTATTGATTATTTCA 67472 Query 8954 AAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTC 9013 || || || | ||||| |||||||| |||||||||||| | || || ||||| | || Sbjct 67471 AAGCCCACTTTTCCGCCAAAGGTGCTTGGTTTCCAGTACTCTGGAGAACAGATAGCATTT 67412 Query 9014 GCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATG 9073 |||| ||||||||||| || || || || || || || | ||| ||||||| |||||| Sbjct 67411 CCCATCAGCCCTTTCAAAGAGAATGGTGCTCCAAGTTCCACCATGGTCTCACCAAAGATG 67352 Query 9074 GCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCG 9133 ||||| ||||| || |||| || | | ||||| ||| || || | ||| || | ||| Sbjct 67351 GCACCAGGACGAGGCCTTTCTACTAGAAGGCCAGGGTACAGCTCCATAGCATCAATGTCT 67292 Query 9134 CCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 ||||| || |||| || || || || || || || || ||| Sbjct 67291 CCATAAAGCTCTTCTAATTCAGCTGCCATTTCTTTTTCTCCT 67250 Score = 141 bits (156), Expect = 1e-28 Identities = 171/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 9736 GTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAG 9795 || ||||| || | |||||| ||| |||||| || || | || || || | || ||| Sbjct 64314 GTAGTTTGGAAAAGCTGCTCATCATTCCATTCTGGATGCACCTGCTTAAGGATGTCACAG 64255 Query 9796 ACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCA 9855 |||| ||||||||||| |||||||| ||||| |||||||||||||| || || |||||| Sbjct 64254 ACCCGATTGTGTTCTCTGAGCCATATTGTGGCATACATCATTAAACCTGGGACCAAACCA 64195 Query 9856 AACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATA 9915 ||||| ||||| || || | ||| |||| | | || || | || | || | ||| Sbjct 64194 AACACCTCATTGCCTACAGAAAATTGCAGGTGCTTAGGAACATGAGGTGGGTAGATCATT 64135 Query 9916 TGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACCTG 9968 | |||| || || || || ||||| || |||||||| || ||||| | ||| Sbjct 64134 TCTGCCTGAGTGTCCTTCACAGTGGGAGGGTACATTTCTCCATCAATCATCTG 64082 >seq45 Length=7072151 Score = 87.8 bits (96), Expect = 3e-12 Identities = 129/181 (71%), Gaps = 4/181 (2%) Strand=Plus/Plus Query 8894 GGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATGTCT 8953 ||||| | ||| || ||| ||| | ||| ||| | | || |||||||| || || Sbjct 4002363 GGACACCGCTTGACGTTGAGACACACGAGCTTCTGGAGCGAAGCTGTTTTCACAATCTCA 4002422 Query 8954 AAACCTACGTCC--CCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGT 9011 || || ||| || || || |||||||| |||||||| ||||||||||||| || Sbjct 4002423 AAGCCA--GTCGAGCCACCAAAAGTGCTGGGCTTCCAGTATTCCGGGGAGCAGATCGGGT 4002480 Query 9012 TCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGA 9071 | | | |||||||||| ||||||||| || || | ||| | |||||||| || || | Sbjct 4002481 TTCCGAAAAGCCCTTTCAGGGAAAACGGGGCTCCAATCTCCACCATGCTCTCCCCAAAAA 4002540 Query 9072 T 9072 | Sbjct 4002541 T 4002541 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/139 (74%), Gaps = 4/139 (3%) Strand=Plus/Plus Query 9553 TCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGG 9612 || |||| ||| | |||||| ||||||| |||||||| | || || |||||| | Sbjct 4005769 TCCGGCATCAGCGCGTGCCAGTGGTAGAGCTGGTTGAACTCCACGGCAATCCGGTTCCTG 4005828 Query 9613 TACTGAAAGGCGGTAC--CGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACC 9670 ||||| || | | || ||||||| | |||||||||||| | ||||| | | ||||| Sbjct 4005829 TACTGGAA--CTGCACGCCGAACAGCAGCTCCGGGTCAAACTTCAGCTGCAGGAAGTACC 4005886 Query 9671 CGCTGAGTTGCTGGACATA 9689 ||||||| ||||| || || Sbjct 4005887 CGCTGAGATGCTGCACGTA 4005905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723016982473000