Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03-
31] 78,595 sequences; 2,365,766,571 total letters
Query= NC_012783.2
Length=226205
Score E
Sequences producing significant alignments: (Bits) Value
seq800 149 9e-31
seq45 87.8 3e-12
>seq800
Length=84292
Score = 149 bits (164), Expect = 9e-31
Identities = 202/282 (72%), Gaps = 0/282 (0%)
Strand=Plus/Minus
Query 8894 GGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATGTCT 8953
||||| |||||||| || || ||||| ||| | || || || || | || ||
Sbjct 67531 GGACAGCCCTTCACGTTATTGCAGATGAGCTTCTGTAGGGAGGCAGTATTGATTATTTCA 67472
Query 8954 AAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTC 9013
|| || || | ||||| |||||||| |||||||||||| | || || ||||| | ||
Sbjct 67471 AAGCCCACTTTTCCGCCAAAGGTGCTTGGTTTCCAGTACTCTGGAGAACAGATAGCATTT 67412
Query 9014 GCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATG 9073
|||| ||||||||||| || || || || || || || | ||| ||||||| ||||||
Sbjct 67411 CCCATCAGCCCTTTCAAAGAGAATGGTGCTCCAAGTTCCACCATGGTCTCACCAAAGATG 67352
Query 9074 GCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCG 9133
||||| ||||| || |||| || | | ||||| ||| || || | ||| || | |||
Sbjct 67351 GCACCAGGACGAGGCCTTTCTACTAGAAGGCCAGGGTACAGCTCCATAGCATCAATGTCT 67292
Query 9134 CCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175
||||| || |||| || || || || || || || || |||
Sbjct 67291 CCATAAAGCTCTTCTAATTCAGCTGCCATTTCTTTTTCTCCT 67250
Score = 141 bits (156), Expect = 1e-28
Identities = 171/233 (73%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 9736 GTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAG 9795
|| ||||| || | |||||| ||| |||||| || || | || || || | || |||
Sbjct 64314 GTAGTTTGGAAAAGCTGCTCATCATTCCATTCTGGATGCACCTGCTTAAGGATGTCACAG 64255
Query 9796 ACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCA 9855
|||| ||||||||||| |||||||| ||||| |||||||||||||| || || ||||||
Sbjct 64254 ACCCGATTGTGTTCTCTGAGCCATATTGTGGCATACATCATTAAACCTGGGACCAAACCA 64195
Query 9856 AACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATA 9915
||||| ||||| || || | ||| |||| | | || || | || | || | |||
Sbjct 64194 AACACCTCATTGCCTACAGAAAATTGCAGGTGCTTAGGAACATGAGGTGGGTAGATCATT 64135
Query 9916 TGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACCTG 9968
| |||| || || || || ||||| || |||||||| || ||||| | |||
Sbjct 64134 TCTGCCTGAGTGTCCTTCACAGTGGGAGGGTACATTTCTCCATCAATCATCTG 64082
>seq45
Length=7072151
Score = 87.8 bits (96), Expect = 3e-12
Identities = 129/181 (71%), Gaps = 4/181 (2%)
Strand=Plus/Plus
Query 8894 GGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATGTCT 8953
||||| | ||| || ||| ||| | ||| ||| | | || |||||||| || ||
Sbjct 4002363 GGACACCGCTTGACGTTGAGACACACGAGCTTCTGGAGCGAAGCTGTTTTCACAATCTCA 4002422
Query 8954 AAACCTACGTCC--CCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGT 9011
|| || ||| || || || |||||||| |||||||| ||||||||||||| ||
Sbjct 4002423 AAGCCA--GTCGAGCCACCAAAAGTGCTGGGCTTCCAGTATTCCGGGGAGCAGATCGGGT 4002480
Query 9012 TCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGA 9071
| | | |||||||||| ||||||||| || || | ||| | |||||||| || || |
Sbjct 4002481 TTCCGAAAAGCCCTTTCAGGGAAAACGGGGCTCCAATCTCCACCATGCTCTCCCCAAAAA 4002540
Query 9072 T 9072
|
Sbjct 4002541 T 4002541
Score = 84.2 bits (92), Expect = 3e-11
Identities = 103/139 (74%), Gaps = 4/139 (3%)
Strand=Plus/Plus
Query 9553 TCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGG 9612
|| |||| ||| | |||||| ||||||| |||||||| | || || |||||| |
Sbjct 4005769 TCCGGCATCAGCGCGTGCCAGTGGTAGAGCTGGTTGAACTCCACGGCAATCCGGTTCCTG 4005828
Query 9613 TACTGAAAGGCGGTAC--CGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACC 9670
||||| || | | || ||||||| | |||||||||||| | ||||| | | |||||
Sbjct 4005829 TACTGGAA--CTGCACGCCGAACAGCAGCTCCGGGTCAAACTTCAGCTGCAGGAAGTACC 4005886
Query 9671 CGCTGAGTTGCTGGACATA 9689
||||||| ||||| || ||
Sbjct 4005887 CGCTGAGATGCTGCACGTA 4005905
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 723016982473000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |