Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03- 31] 78,595 sequences; 2,365,766,571 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq78565 93.3 3e-14 >seq78565 Length=14964121 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || ||||| | ||||| ||||| |||| |||| |||||| || || || || |||| | Sbjct 6183977 CCACCTCGGAGGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGAC 6183918 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | ||| |||| |||| || || ||| |||| || | | |||||| || | || Sbjct 6183917 AGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGA 6183858 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGT--CTGCGCTTTCCA 39670 | |||||||||||| ||||| || | || | | |||| ||| || || | Sbjct 6183857 ATGCCTTCTTTGTCTTGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGC--TCTA 6183800 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | |||| || || ||||| ||||| || ||||| || ||||||||||| Sbjct 6183799 CTTCCAGGGTGATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 6183751 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/226 (69%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 39496 CCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAA 39555 ||||| | ||||| ||||| |||| |||| |||||| || || || || |||| || Sbjct 6184430 CCTCGGAGGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGG 6184371 Query 39556 ACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACG 39615 ||| |||| |||| || || ||| |||| || | | |||||| || | || | | Sbjct 6184370 GTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATG 6184311 Query 39616 CCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGT--CTGCGCTTTCCACGT 39673 ||||||||||| ||||| ||| | || | | |||| ||| || || || | Sbjct 6184310 CCTTCTTTGTCTTGGATTTTGGCTTTGACATTCTCAATGGTGTCGCTGGGC--TCTACCT 6184253 Query 39674 CCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | | || || ||||| ||||| || ||||| || ||||||||||| Sbjct 6184252 CTAGGGTGATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 6184207 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || ||||| | ||||| ||||| |||| |||| |||||| || || || || |||| | Sbjct 6184205 CCACCTCGGAGGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGAC 6184146 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | ||| |||| |||| || || ||| |||| || | | |||||| || | || Sbjct 6184145 AGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGA 6184086 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGT--CTGCGCTTTCCA 39670 | |||||||||||| ||||| || | || | | |||| ||| || || | Sbjct 6184085 ATGCCTTCTTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGC--TCTA 6184028 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || | || || ||||| ||||| || ||||| || ||||||||||| Sbjct 6184027 CTTCTAGGGTGATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 6183979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347036862801635