Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03- 31] 78,595 sequences; 2,365,766,571 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq26 215 7e-51 seq78578 185 1e-41 seq63 113 6e-20 seq120 91.5 2e-13 >seq26 Length=11608308 Score = 215 bits (238), Expect = 7e-51 Identities = 743/1148 (65%), Gaps = 18/1148 (2%) Strand=Plus/Minus Query 7010 TCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTA 7069 || ||| | | |||||| || || || | || || || || || ||||| |||||||| Sbjct 9936329 TCCCCCATGAGGATGGCAGCCTGCACTGCGGCGCCATAAGCTACGGCCTCGTCGGGGTTG 9936270 Query 7070 ATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGG 7129 || | || || || || || ||||| ||| | ||| || | | ||| || || ||| Sbjct 9936269 ATGCTCTTGTTGAGCTCCTTGCCGTTGAAAAAGTCCTGCAAGAGCTTTTGGATCTTGGGG 9936210 Query 7130 ATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAG 7189 || || || || || || |||| ||||| || | | | || || | ||| | Sbjct 9936209 ATGCGGGTGGAGCCGCCCACCAGCACGATCTCCTGGATCTGGCCCTTGTCTAGCTTGGCA 9936150 Query 7190 TCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCC 7249 || || || | || || || || |||| ||||| | ||| || ||| Sbjct 9936149 TCGCGCAGGGCCTTCTCCACGGGCTCCAAGGTGCCGCGGAAGAGGTCGGCGTTGAGCTCC 9936090 Query 7250 TCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATT 7309 || || || || ||||| ||||| || ||||| || | ||| ||| | | ||| || || Sbjct 9936089 TCGAAGCGGGCGCGGGTGATGGAAGTGTAGAAGTCGATGCCCTCGAACAGCGAGTCGATC 9936030 Query 7310 TCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGT 7369 || ||| | | || | | || | ||| ||||| || ||||| || || || || Sbjct 9936029 TCGATGCTAGCCTGGGTGGAGGAGCTCAGCGTGCGCTTGGCCCGCTCGCAGGCAGTGCGC 9935970 Query 7370 AAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCT 7429 | || || | || ||| ||| | | || || ||| || || || || ||||| Sbjct 9935969 AGCCGCCGCACCGCCCGCTTGTTGCTGCCGATGTCCCGCTTGTGCTTGCGCTTGAACTCC 9935910 Query 7430 TCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCC 7489 || |||||| | | | | || || || || || |||| ||| || || || Sbjct 9935909 TCCACGAAGTGGCTCACCATGCGGTTGTCAAAGTCCTCGCCGCCCAGGTGGGTGTCGCCG 9935850 Query 7490 GCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTA 7549 || || | || || || ||||| || | || ||| | | | || || || || || Sbjct 9935849 GCTGTGGACTTCACCTCGAAGATGCCGTCCTCGATGGTGAGGATGGAGACGTCGAAGGTG 9935790 Query 7550 CCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTG------TTCTTATCG 7603 || || |||| ||| || ||||| |||||| | ||| || | | ||||| || Sbjct 9935789 CCGCCGCCCAAGTCGAAGATGAGCACGTTCTTCTCGCCGGCCCCGGTGCCTTTCTTGTCC 9935730 Query 7604 AGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCA 7663 || ||||| ||||| || |||||||| || || || || ||||| || ||| ||||| Sbjct 9935729 AGCCCGTAGGCGATGGCGGCCGCCGTGGGCTCGTTGATGATACGGAGCACGTTGAGGCCG 9935670 Query 7664 GCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACC 7723 | || || | || ||||| || || || || || || ||||| |||||||| || || Sbjct 9935669 GTGATGGTGCCGGCGTCTTTGGTGGCCTGGCGCTGGGAGTCGTTGAAGTAGGCGGGCACG 9935610 Query 7724 GTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTG 7783 || | ||| |||| | || || || || || | |||||||| || ||||| ||| Sbjct 9935609 GTGATGACGGCGTTCTGCACCTTGCGGCCCAGGTAGGCCTCCGCGATCTCCTTCATCTTG 9935550 Query 7784 GTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTT-TCACCGTTAAAATC 7842 || || ||||| || ||||| || | | | | || | ||| || || || | || Sbjct 9935549 GTGAGCACCATGGAGCTGATCTCCTCGGG-GAAGAAGGTCTTGTTCTCGCCCTTGTACTC 9935491 Query 7843 AACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTCAT 7902 || || | | |||| || |||| | || | || | | ||| | ||||| Sbjct 9935490 CACCTCCACCTTGGGCTTG-CCGC--CCTCGCTCACCACGCGGAAGGGCCAGTGCTTCAT 9935434 Query 7903 ATCGTCTTGGACCTGTTG-GTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAA 7961 ||| || ||| || | ||| |||| | ||||| || ||||| || || || | Sbjct 9935433 GTCGGACTGCACC-GTGGTGTCATCGTACTTCCGGCCGATGAGGCGCTTGGCGTCGAAGA 9935375 Query 7962 CTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCAT 8021 ||||| ||||||||||||| |||||||| || ||||||||||| || || || Sbjct 9935374 TGGTGTTGGTGGGGTTCATGGCGACCTGGTTCTTGGCGGCGTCCCCGATGAGGCGCTC-- 9935317 Query 8022 TATTTTCCGTAAACGCGACGTACGATGGG-GTCGTTCGATTCCCTTGGTCGTTCGCAATA 8080 | || || || || || || | |||| || || || || || |||||||| || || Sbjct 9935316 -GGTGTCGGTGAAGGCCACATA-GCTGGGCGTGGTGCGGTTGCCCTGGTCGTTGGCGATG 9935259 Query 8081 ATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAATA 8140 || || || | ||| ||| |||| || ||||| || ||||| || || | || || Sbjct 9935258 ATCTCGACCTTGCCGTGTTGAAAGACACCCACGCAGGAGTACGTGGTGCCCAGGTCGATG 9935199 Query 8141 CCGATTGC 8148 || || || Sbjct 9935198 CCAATAGC 9935191 >seq78578 Length=5143557 Score = 185 bits (204), Expect = 1e-41 Identities = 365/540 (68%), Gaps = 0/540 (0%) Strand=Plus/Plus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 || || || || || || ||||| || || || | |||||||| ||||| || || || Sbjct 2804510 GCACCATAAGCCACAGCTTCATCAGGATTGATGCTCTTATTCAGCTCTTTGCCATTGAAG 2804569 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 ||||| | || || ||||| || |||||||| || || ||||| |||| || || Sbjct 2804570 AAATCCTGCAGCAGTTTCTGAATCTTGGGGATTCGGGTAGACCCACCAACCAGTACAATA 2804629 Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATA 7219 |||| | | ||||| || | || | || || || | || || || || |||| | Sbjct 2804630 TCATGGATCTGTGATTTGTCTAGTTTGGCATCCCGCAGGGCCTTCTCCACGGGATCCAGA 2804689 Query 7220 CATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG 7279 |||||||| || | | || |||||||| || | |||||| || || || Sbjct 2804690 GTGCCACGGAACAGATCAGCATTTAACTCTTCAAAACGAGCTCTGGTAATTGAGGTGTAA 2804749 Query 7280 AAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAAC 7339 ||||||| ||| || || | || ||||| ||||| | | || | | || || | Sbjct 2804750 AAATCAATGCCCTCATAGAGAGAGTCAATCTCAATACTGGCCTGAGTGCTAGAGGAGAGG 2804809 Query 7340 GTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA 7399 || |||||||| || ||||| || || || | ||| |||| || | | ||| | | | Sbjct 2804810 GTACGCTTTGCACGTTCACAAGCAGTGCGGAGACGGCGAACTGCTCTCTTGTTCTCAGTA 2804869 Query 7400 ATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCG 7459 || || ||||| || ||||| || || || || ||| || | | | ||| Sbjct 2804870 ATGTCCTTCTTGTGCTTACGCTTGAATTCAGCAATGAAATGGTTGACCATACGGTTATCA 2804929 Query 7460 AAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCT 7519 || || || ||||||||||| ||||| || || || | || ||||||||||| || | Sbjct 2804930 AAGTCCTCCCCACCCAAGTGGGTATCACCTGCAGTTGACTTTACTTCAAAGATGCCATCC 2804989 Query 7520 TCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTC 7579 ||||| | | | |||||||||||| || |||||||| |||||||| || || || ||| Sbjct 2804990 TCAATAGTGAGGATCGAAACATCAAAAGTGCCACCACCAAGGTCAAAGATAAGGACATTC 2805049 >seq63 Length=5943102 Score = 113 bits (124), Expect = 6e-20 Identities = 441/684 (64%), Gaps = 16/684 (2%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 |||||||| || || |||| ||| || |||||||| || || || || || ||||| || Sbjct 559831 TCGAAATCCTCCCCGCCCAGGTGGGTGTCCCCCGCCGTGGCCTTCACCTCGAAGATGCCG 559772 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | || | | | || || || || || || ||||||||||| || ||||| | | Sbjct 559771 TCGTCCACCCCGAGGATGGACACGTCGAAGGTGCCGCCACCCAGGTCGAAGATGAGGATG 559712 Query 7577 TT---CGTATCGTCGTCTTTGTTCTTA---TCGAGACCGTACGCGATAGCCGCCGCCGTT 7630 || | | | || ||||| | || || ||||| || || || || ||||| Sbjct 559711 TTGCGCTTCCCTTCCCCTTTGCGGCTGGCCTCCAGGCCGTAAGCAATGGCTGCTGCCGTG 559652 Query 7631 GGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCT 7690 || ||||| | || || || |||||||| || || | |||||| | || || Sbjct 559651 GGCTCATTGAGGATCTTCAGGACGTGGAGGCCAGCGATCGTCCCAGCATCTATGGTGGCC 559592 Query 7691 TGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTA 7750 | || || || ||||| || ||||| || ||||| | ||| || | |||| Sbjct 559591 CGGCGCTGGGAGTCGTTGAAATAGGCTGGCACCGTGATGACGGCCTGGGTGATGGGGCAG 559532 Query 7751 CCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCA 7810 || || || | || || | | ||||| |||| || || || | || ||||| ||| Sbjct 559531 CCTAGGTAGGCCTCAGCCGTCTGCTTCATCTTGGCGAGCACTATGGCGGAGATCTCCTCA 559472 Query 7811 GCCGCAAACTGTTTCGT-TTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGC 7869 | || ||| ||| || | || || || || | || | || ||| | Sbjct 559471 GGGTAGAAGGCCTTCTCCTTCCCCTTGAAGGACACCTGCAC-CTTGAGCTTC-CCG--GT 559416 Query 7870 ACCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAA 7929 | || | |||| | | | ||| | || | || || ||| ||||| || Sbjct 559415 ATCGCTCACCACCTGAAAGGGCCAGTGCCTCGTGTCCAGCTGAACCATGGGGTCCTCAAC 559356 Query 7930 CTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTG 7989 | ||| ||||| || ||||| |||||||| || ||||| | |||||| | ||| | || Sbjct 559355 CATTCGGCCGATCAGCCGCTTGGCATCAAAGACGGTGTTCTGGGGGTTGAGGGCCGCCTG 559296 Query 7990 GTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGG 8049 |||||| || | |||||| | || || || | | | || || || ||||| | ||| Sbjct 559295 GTTCTTGGCTGGGTCCCCCACCAGGCGCTCCGTGTCT---GTGAAAGCCACGTA-GCTGG 559240 Query 8050 G-GTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGC 8108 | || || || |||||||||||||| || || || || || | ||| || ||||| | Sbjct 559239 GCGTGGTCCGGTTCCCTTGGTCGTTGGCGATGATCTCCACCTTGCCGTGCTGGCAGACCC 559180 Query 8109 CGACGCACGAATACGTTGTTCCTA 8132 | ||||| || || || || |||| Sbjct 559179 CCACGCAGGAGTAGGTCGTGCCTA 559156 >seq120 Length=3203753 Score = 91.5 bits (100), Expect = 2e-13 Identities = 127/178 (71%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 7937 CCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTC 7996 || || || || || ||||| || || ||||| | |||||| || ||||||||| Sbjct 1040232 CCAATGAGGCGTTTGGCATCGAACACGGTGTTCTCGGGGTTGGAGGTGAGCTGGTTCTTC 1040291 Query 7997 GCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTT 8056 |||||||| ||||| || || || | || ||||| ||||| || || || | Sbjct 1040292 GCCGCGTCGCCGATGAGCCGCTCGCCCTCGGGGGTGAACGCCACGTAGGACGGCGTGATG 1040351 Query 8057 CGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGC 8114 || || || ||||| ||||| || ||||| |||||| |||| | |||||||||||| Sbjct 1040352 CGGTTGCCCTGGTCATTCGCGATGATTTCCACGCGGCCGTTCTTGAAGACGCCGACGC 1040409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634508821719800