Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03-
31] 78,595 sequences; 2,365,766,571 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq78565 165 2e-35
seq39 125 2e-23
>seq78565
Length=14964121
Score = 165 bits (182), Expect = 2e-35
Identities = 171/224 (76%), Gaps = 0/224 (0%)
Strand=Plus/Minus
Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978
|| ||| | || || | ||| |||||||| ||||| || || ||||| |||| || ||
Sbjct 6183972 TCGGAGGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGT 6183913
Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038
| ||||||||| |||||||| || || ||||| || | || |||||||||||||||||
Sbjct 6183912 GCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCC 6183853
Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098
|||||||||||| ||||| |||||| |||||||||||||| || ||||| ||
Sbjct 6183852 TTCTTTGTCTTGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACTTCCAG 6183793
Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142
||| | || || || ||||| ||||| || || | |||||||
Sbjct 6183792 GGTGATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCATTT 6183749
Score = 158 bits (174), Expect = 3e-33
Identities = 168/222 (76%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978
|| ||| | || || | ||| |||||||| ||||| || || ||||| |||| || ||
Sbjct 6184200 TCGGAGGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGT 6184141
Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038
| ||||||||| |||||||| || || ||||| || | || |||||||||||||||||
Sbjct 6184140 GCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCC 6184081
Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098
||||||||| || ||||| |||||| |||||||||||||| || ||||| ||
Sbjct 6184080 TTCTTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACTTCTAG 6184021
Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
||| | || || || ||||| ||||| || || | |||||
Sbjct 6184020 GGTGATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 6183979
Score = 152 bits (168), Expect = 1e-31
Identities = 167/222 (75%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978
|| ||| | || || | ||| |||||||| ||||| || || ||||| |||| || ||
Sbjct 6184428 TCGGAGGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGT 6184369
Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038
| ||||||||| |||||||| || || ||||| || | || |||||||||||||||||
Sbjct 6184368 GCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCC 6184309
Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098
|||||||||||| ||||| ||||| |||||||||||||| || || || ||
Sbjct 6184308 TTCTTTGTCTTGGATTTTGGCTTTGACATTCTCAATGGTGTCGCTGGGCTCTACCTCTAG 6184249
Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
||| | || || || ||||| ||||| || || | |||||
Sbjct 6184248 GGTGATGGTTTTGCCCGTCAAGGTTTTCACAAAGATCTGCAT 6184207
>seq39
Length=8077485
Score = 125 bits (138), Expect = 2e-23
Identities = 163/224 (73%), Gaps = 6/224 (3%)
Strand=Plus/Plus
Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979
|| || | ||| |||||||| || |||||||| || || || ||||| || | || ||
Sbjct 4823154 CTCAGACGCAACACAAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCAGATAGGGTG 4823213
Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039
| |||||||| |||||||| || || ||||| || | || ||||| || || ||||||
Sbjct 4823214 CGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGTGGGATGCCT 4823273
Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCA 195096
|||||||| || || || |||||| |||||||| ||||| ||| || || ||
Sbjct 4823274 TCTTTGTCCTGGATCTTAGCCTTGACATTCTCAATAGTGTC---ACTGGGCTCAACCTCT 4823330
Query 195097 AGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
||||| | ||||| || |||| || || || || | |||||
Sbjct 4823331 AGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 4823374
Score = 123 bits (136), Expect = 6e-23
Identities = 163/225 (72%), Gaps = 6/225 (3%)
Strand=Plus/Plus
Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978
||| || | || |||||||| || |||||||| || || || ||||| || | || ||
Sbjct 4823381 TCTCAGACGCAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGT 4823440
Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038
| |||||||| |||||||| || || ||||| || | || ||||| || || |||||
Sbjct 4823441 GCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGTGGGATGCC 4823500
Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095
||||||||| || || || |||||| |||||||| ||||| ||| || || ||
Sbjct 4823501 TTCTTTGTCCTGGATCTTAGCCTTGACATTCTCAATAGTGTC---ACTGGGCTCAACCTC 4823557
Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
||||| | ||||| || |||| || || || || | |||||
Sbjct 4823558 TAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 4823602
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1108364353762365
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |