Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03- 31] 78,595 sequences; 2,365,766,571 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq78565 125 5e-24 seq39 113 3e-20 >seq78565 Length=14964121 Score = 125 bits (138), Expect = 5e-24 Identities = 156/212 (74%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| ||||||||| ||||| ||||| || ||| | || |||| ||| Sbjct 6184415 ACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCC 6184356 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| ||||||||||| || || | ||||||||| | || | || || ||||| Sbjct 6184355 AGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCTTGG 6184296 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 || || |||||| || || || | || | || ||| || || | ||| ||||||| Sbjct 6184295 ATTTTGGCTTTGAC--ATTCTCAATGGTGTCGCTGGGCTCTACCTCTAGGGTGATGGTTT 6184238 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | ||||| | || |||||||||||||||||| Sbjct 6184237 TGCCCGTCAAGGTTTTCACAAAGATCTGCATA 6184206 Score = 122 bits (134), Expect = 6e-23 Identities = 157/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| ||||||||| ||||| ||||| || ||| | || |||| ||| Sbjct 6183959 ACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCC 6183900 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| ||||||||||| || || | ||||||||| | || | || || ||||| Sbjct 6183899 AGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCTTGG 6183840 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 || || ||||| || || || | || | || ||| || || | ||| ||||||| Sbjct 6183839 ATTTTGGCCTTGAC--ATTCTCAATGGTGTCGCTGGGCTCTACTTCCAGGGTGATGGTTT 6183782 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATATTC 34985 | ||||| | || ||||||||||||||||| ||| Sbjct 6183781 TGCCCGTCAAGGTTTTCACAAAGATCTGCATTTTC 6183747 Score = 120 bits (132), Expect = 2e-22 Identities = 155/212 (73%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| ||||||||| ||||| ||||| || ||| | || |||| ||| Sbjct 6184187 ACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCC 6184128 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| ||||||||||| || || | ||||||||| | || | || || ||||| Sbjct 6184127 AGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCCTGG 6184068 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 || || ||||| || || || | || | || ||| || || | ||| ||||||| Sbjct 6184067 ATTTTGGCCTTGAC--ATTCTCAATGGTGTCGCTGGGCTCTACTTCTAGGGTGATGGTTT 6184010 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | ||||| | || |||||||||||||||||| Sbjct 6184009 TGCCCGTCAAGGTTTTCACAAAGATCTGCATA 6183978 >seq39 Length=8077485 Score = 113 bits (124), Expect = 3e-20 Identities = 164/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || ||||||| | ||| || | ||| | ||| || ||||| ||||| ||||| || Sbjct 4823148 CCACCCCTCAGACGCAACACAAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCAGAT 4823207 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || |||| |||||||| || || ||||| || || | |||||||| | || Sbjct 4823208 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGTGGG 4823267 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932 | || || ||||| ||||| ||||| || || || | |||| || ||||| Sbjct 4823268 ATGCCTTCTTTGTCCTGGATCTTAGCCTTGAC--ATTCTCAATAGTGTCACTGGGCTCAA 4823325 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | || | ||| ||||| || || || || ||||||||||||||||||||| Sbjct 4823326 CCTCTAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATA 4823375 Score = 105 bits (116), Expect = 4e-18 Identities = 142/196 (72%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || ||| | || |||| |||||||| || || ||||| Sbjct 4823412 TCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAG 4823471 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||||| | || | || || ||||| ||||| ||||| || Sbjct 4823472 ATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCTTTGTCCTGGATCTTAGCCTTGAC--AT 4823529 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | |||| || |||||| || | ||| ||||| || || || || ||||||| Sbjct 4823530 TCTCAATAGTGTCACTGGGCTCAACCTCTAGGGTGATGGTCTTGCCAGTCAGGGTCTTCA 4823589 Query 34969 CAAAGATCTGCATATT 34984 ||||||||||||| || Sbjct 4823590 CAAAGATCTGCATGTT 4823605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324322641083160