Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03-
31] 78,595 sequences; 2,365,766,571 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq78565 125 5e-24
seq39 113 3e-20
>seq78565
Length=14964121
Score = 125 bits (138), Expect = 5e-24
Identities = 156/212 (74%), Gaps = 4/212 (2%)
Strand=Plus/Minus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||||||| | ||| ||||||||| ||||| ||||| || ||| | || |||| |||
Sbjct 6184415 ACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCC 6184356
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
||||| ||||||||||| || || | ||||||||| | || | || || |||||
Sbjct 6184355 AGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCTTGG 6184296
Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950
|| || |||||| || || || | || | || ||| || || | ||| |||||||
Sbjct 6184295 ATTTTGGCTTTGAC--ATTCTCAATGGTGTCGCTGGGCTCTACCTCTAGGGTGATGGTTT 6184238
Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
| ||||| | || ||||||||||||||||||
Sbjct 6184237 TGCCCGTCAAGGTTTTCACAAAGATCTGCATA 6184206
Score = 122 bits (134), Expect = 6e-23
Identities = 157/215 (73%), Gaps = 4/215 (2%)
Strand=Plus/Minus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||||||| | ||| ||||||||| ||||| ||||| || ||| | || |||| |||
Sbjct 6183959 ACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCC 6183900
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
||||| ||||||||||| || || | ||||||||| | || | || || |||||
Sbjct 6183899 AGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCTTGG 6183840
Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950
|| || ||||| || || || | || | || ||| || || | ||| |||||||
Sbjct 6183839 ATTTTGGCCTTGAC--ATTCTCAATGGTGTCGCTGGGCTCTACTTCCAGGGTGATGGTTT 6183782
Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATATTC 34985
| ||||| | || ||||||||||||||||| |||
Sbjct 6183781 TGCCCGTCAAGGTTTTCACAAAGATCTGCATTTTC 6183747
Score = 120 bits (132), Expect = 2e-22
Identities = 155/212 (73%), Gaps = 4/212 (2%)
Strand=Plus/Minus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||||||| | ||| ||||||||| ||||| ||||| || ||| | || |||| |||
Sbjct 6184187 ACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCC 6184128
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
||||| ||||||||||| || || | ||||||||| | || | || || |||||
Sbjct 6184127 AGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCCTGG 6184068
Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950
|| || ||||| || || || | || | || ||| || || | ||| |||||||
Sbjct 6184067 ATTTTGGCCTTGAC--ATTCTCAATGGTGTCGCTGGGCTCTACTTCTAGGGTGATGGTTT 6184010
Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
| ||||| | || ||||||||||||||||||
Sbjct 6184009 TGCCCGTCAAGGTTTTCACAAAGATCTGCATA 6183978
>seq39
Length=8077485
Score = 113 bits (124), Expect = 3e-20
Identities = 164/230 (71%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814
|| ||||||| | ||| || | ||| | ||| || ||||| ||||| ||||| ||
Sbjct 4823148 CCACCCCTCAGACGCAACACAAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCAGAT 4823207
Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874
||| | || |||| |||||||| || || ||||| || || | |||||||| | ||
Sbjct 4823208 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGTGGG 4823267
Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932
| || || ||||| ||||| ||||| || || || | |||| || |||||
Sbjct 4823268 ATGCCTTCTTTGTCCTGGATCTTAGCCTTGAC--ATTCTCAATAGTGTCACTGGGCTCAA 4823325
Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
| || | ||| ||||| || || || || |||||||||||||||||||||
Sbjct 4823326 CCTCTAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATA 4823375
Score = 105 bits (116), Expect = 4e-18
Identities = 142/196 (72%), Gaps = 4/196 (2%)
Strand=Plus/Plus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||| ||||| ||||| || ||| | || |||| |||||||| || || |||||
Sbjct 4823412 TCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAG 4823471
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| || | |||||||| | || | || || ||||| ||||| ||||| ||
Sbjct 4823472 ATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCTTTGTCCTGGATCTTAGCCTTGAC--AT 4823529
Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968
|| || | |||| || |||||| || | ||| ||||| || || || || |||||||
Sbjct 4823530 TCTCAATAGTGTCACTGGGCTCAACCTCTAGGGTGATGGTCTTGCCAGTCAGGGTCTTCA 4823589
Query 34969 CAAAGATCTGCATATT 34984
||||||||||||| ||
Sbjct 4823590 CAAAGATCTGCATGTT 4823605
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324322641083160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |