Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03-
31] 78,595 sequences; 2,365,766,571 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq78549 114 1e-20
seq135 93.3 5e-14
seq140 89.7 6e-13
>seq78549
Length=11360908
Score = 114 bits (126), Expect = 1e-20
Identities = 107/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042
|||| ||||| || || | |||||||||||| || | |||||||| | ||||| || |
Sbjct 7628609 CCTCATCTCTGCTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAACCCTCTCTTCT 7628668
Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102
| ||||| || || || ||||| || ||||| ||||| || ||||| |||||||||||||
Sbjct 7628669 TCAACCAAAAGATGGATGCAAAGGAGCCAGAGAAGAAGATTCCTTCCACTGCTGCAAAAG 7628728
Query 19103 CAACTAGTCTTTCTCC 19118
| |||| | ||||||
Sbjct 7628729 CTACTACACGTTCTCC 7628744
Score = 105 bits (116), Expect = 8e-18
Identities = 88/108 (81%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 19221 TGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTAT 19280
|| |||||||| || | |||||| | | |||||||||||||||||| || ||||| ||
Sbjct 7631695 TGGATCTTTAATGTAAGTATCTATGAGCAGACTGTACATTTCTGAATGTATGTTTTCCAT 7631754
Query 19281 AGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTC 19328
||| ||||| || || || ||||| | ||||||||||| |||||||||
Sbjct 7631755 AGCAATCTGGAAGCCATAGAAACAGCGTGCTTCTGTTACCTGTACTTC 7631802
>seq135
Length=2957239
Score = 93.3 bits (102), Expect = 5e-14
Identities = 102/136 (75%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042
|||| |||| || || | ||||| || ||||| | ||||||||||| || || || |
Sbjct 2809036 CCTCATCTCGGCTAATGAGCTCATTGGAGAATGTCAGTCCAGGCATCAGACCCCTCTTCT 2808977
Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102
| | ||| || |||| |||||| || || || ||||| || ||||| ||||| ||||| |
Sbjct 2808976 TCAGCCAAAAAATAGCAGCAAAAGAACCTGAGAAGAAGATCCCTTCCACTGCGGCAAAGG 2808917
Query 19103 CAACTAGTCTTTCTCC 19118
|||| | ||| || ||
Sbjct 2808916 CAACCACTCTCTCCCC 2808901
Score = 84.2 bits (92), Expect = 2e-11
Identities = 91/120 (76%), Gaps = 2/120 (2%)
Strand=Plus/Minus
Query 19462 ACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACGA 19521
|| ||||| ||||||| || ||||| | ||| ||||||||||||||||||||||| |
Sbjct 2796812 ACCTCTTCTGCTGTCCAGAAGGAAGCTTGTGCCTTTTTATACATGTTCCATATATCCGGG 2796753
Query 19522 TATTGTATAGGAAATATAACAAATCTATTTTTATTTTCTTTAAGAATAGGTTC--CATTT 19579
||||| | || || || ||||||||| ||||| | | |||| ||| || |||||
Sbjct 2796752 TATTGGAGTGGGAAGATGACAAATCTACGAGGATTTTTTCTGAGAAGAGGCTCTTCATTT 2796693
>seq140
Length=3053534
Score = 89.7 bits (98), Expect = 6e-13
Identities = 121/169 (72%), Gaps = 0/169 (0%)
Strand=Plus/Plus
Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109
|||| |||||||| ||||| || || | ||| ||| | || |||| |||||| || |
Sbjct 7125 TCCACCCATAGAAGTGCATGCTGGTGAGTTTGCCATAGTTGGGCTCTGCAATATGGATGT 7184
Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169
| || || || ||||||||||| || || ||||| ||||||||||| | | || |
Sbjct 7185 TCAGGGACTGGCTCTGATCAATGAAAGCGCCTCTGTCAGCTGCCATTTTGAGGATGGTCT 7244
Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218
| || | || ||||| || || ||||| | || || | ||| |||||
Sbjct 7245 TCTGGGAGATTTCCCAGACCGTCTTATAGAGCTGCTTCAAGTCATCTGG 7293
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 561556563235800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |