Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03- 31] 78,595 sequences; 2,365,766,571 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq78549 114 1e-20 seq135 93.3 5e-14 seq140 89.7 6e-13 >seq78549 Length=11360908 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || || | |||||||||||| || | |||||||| | ||||| || | Sbjct 7628609 CCTCATCTCTGCTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAACCCTCTCTTCT 7628668 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | ||||| || || || ||||| || ||||| ||||| || ||||| ||||||||||||| Sbjct 7628669 TCAACCAAAAGATGGATGCAAAGGAGCCAGAGAAGAAGATTCCTTCCACTGCTGCAAAAG 7628728 Query 19103 CAACTAGTCTTTCTCC 19118 | |||| | |||||| Sbjct 7628729 CTACTACACGTTCTCC 7628744 Score = 105 bits (116), Expect = 8e-18 Identities = 88/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 19221 TGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTAT 19280 || |||||||| || | |||||| | | |||||||||||||||||| || ||||| || Sbjct 7631695 TGGATCTTTAATGTAAGTATCTATGAGCAGACTGTACATTTCTGAATGTATGTTTTCCAT 7631754 Query 19281 AGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTC 19328 ||| ||||| || || || ||||| | ||||||||||| ||||||||| Sbjct 7631755 AGCAATCTGGAAGCCATAGAAACAGCGTGCTTCTGTTACCTGTACTTC 7631802 >seq135 Length=2957239 Score = 93.3 bits (102), Expect = 5e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| |||| || || | ||||| || ||||| | ||||||||||| || || || | Sbjct 2809036 CCTCATCTCGGCTAATGAGCTCATTGGAGAATGTCAGTCCAGGCATCAGACCCCTCTTCT 2808977 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||| || |||| |||||| || || || ||||| || ||||| ||||| ||||| | Sbjct 2808976 TCAGCCAAAAAATAGCAGCAAAAGAACCTGAGAAGAAGATCCCTTCCACTGCGGCAAAGG 2808917 Query 19103 CAACTAGTCTTTCTCC 19118 |||| | ||| || || Sbjct 2808916 CAACCACTCTCTCCCC 2808901 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/120 (76%), Gaps = 2/120 (2%) Strand=Plus/Minus Query 19462 ACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACGA 19521 || ||||| ||||||| || ||||| | ||| ||||||||||||||||||||||| | Sbjct 2796812 ACCTCTTCTGCTGTCCAGAAGGAAGCTTGTGCCTTTTTATACATGTTCCATATATCCGGG 2796753 Query 19522 TATTGTATAGGAAATATAACAAATCTATTTTTATTTTCTTTAAGAATAGGTTC--CATTT 19579 ||||| | || || || ||||||||| ||||| | | |||| ||| || ||||| Sbjct 2796752 TATTGGAGTGGGAAGATGACAAATCTACGAGGATTTTTTCTGAGAAGAGGCTCTTCATTT 2796693 >seq140 Length=3053534 Score = 89.7 bits (98), Expect = 6e-13 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| |||||||| ||||| || || | ||| ||| | || |||| |||||| || | Sbjct 7125 TCCACCCATAGAAGTGCATGCTGGTGAGTTTGCCATAGTTGGGCTCTGCAATATGGATGT 7184 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | || || || ||||||||||| || || ||||| ||||||||||| | | || | Sbjct 7185 TCAGGGACTGGCTCTGATCAATGAAAGCGCCTCTGTCAGCTGCCATTTTGAGGATGGTCT 7244 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218 | || | || ||||| || || ||||| | || || | ||| ||||| Sbjct 7245 TCTGGGAGATTTCCCAGACCGTCTTATAGAGCTGCTTCAAGTCATCTGG 7293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561556563235800