Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03- 31] 78,595 sequences; 2,365,766,571 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq78578 107 2e-17 >seq78578 Length=5143557 Score = 107 bits (118), Expect = 2e-17 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| |||| || | || |||||||| || || |||||||| || || || || || Sbjct 2805327 GTTACTAATGCTGTGGTCACAGTACCAGCCTACTTCAATGACTCCCAGCGCCAGGCCACA 2805268 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 |||||||||||| ||||| || || ||||| || || || ||||||||||| || ||| Sbjct 2805267 AAAGATGCTGGAACCATTGCAGGTCTCAATGTGCTCCGGATCATCAATGAACCGACAGCT 2805208 Query 550511 GCTGCACTTGCATATGG 550527 ||||| |||| ||||| Sbjct 2805207 GCTGCTATTGCTTATGG 2805191 Score = 87.8 bits (96), Expect = 1e-11 Identities = 132/186 (71%), Gaps = 4/186 (2%) Strand=Plus/Minus Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057 || || ||| | || ||||| ||| ||||||||||| | || |||| || || ||| Sbjct 2806679 GGAATTGATCTTGGCACCACGTATTCCTGTGTTGGTGTCTTCCAGCATGGCAAGGTGGAA 2806620 Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117 || |||||||||||||| |||||||| || || || ||| ||| | ||||| || || Sbjct 2806619 ATCATTGCCAATGATCAGGGTAACAGGACCACGCCGAGTTACGTTGCCTTCACAGATACA 2806560 Query 550118 GAACATTTAGTTGGTGATGCAGCAAAATATCAAG--CCACTGGTAATCCTACCAATACTA 550175 || | |||| ||||| ||||| | |||| || || |||||||| || || Sbjct 2806559 GAGAGGCTGATTGGCGATGCTGCAAAGAACCAAGTTGCAATG--AATCCTACTAACACAG 2806502 Query 550176 TTTTTG 550181 | |||| Sbjct 2806501 TCTTTG 2806496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4025139541936550