Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03- 31] 78,595 sequences; 2,365,766,571 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq78565 116 3e-21 seq39 91.5 1e-13 >seq78565 Length=14964121 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || || || || |||||||| || || ||||| |||| | || | |||| ||| Sbjct 6183959 ACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCC 6183900 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| || ||||| |||| | ||| || || || |||||||||||||| ||||| Sbjct 6183899 AGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCTTGG 6183840 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 ||||| || ||| | || | ||||| | || ||||| || |||| |||||| Sbjct 6183839 ATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACTTCCAGGGTGATGGTTTTG 6183780 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || ||||| ||||| |||||||| Sbjct 6183779 CCCGTCAAGGTTTTCACAAAGATCTGCAT 6183751 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || || || || |||||||| || || ||||| |||| | || | |||| ||| Sbjct 6184415 ACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCC 6184356 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| || ||||| |||| | ||| || || || |||||||||||||| ||||| Sbjct 6184355 AGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCTTGG 6184296 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 ||||| ||| ||| | || | ||||| | || || || || |||| |||||| Sbjct 6184295 ATTTTGGCTTTGACATTCTCAATGGTGTCGCTGGGCTCTACCTCTAGGGTGATGGTTTTG 6184236 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || ||||| ||||| |||||||| Sbjct 6184235 CCCGTCAAGGTTTTCACAAAGATCTGCAT 6184207 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || || || || |||||||| || || ||||| |||| | || | |||| ||| Sbjct 6184187 ACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCC 6184128 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| || ||||| |||| | ||| || || || |||||||||||||| || || Sbjct 6184127 AGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCCTGG 6184068 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 ||||| || ||| | || | ||||| | || ||||| || |||| |||||| Sbjct 6184067 ATTTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACTTCTAGGGTGATGGTTTTG 6184008 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || ||||| ||||| |||||||| Sbjct 6184007 CCCGTCAAGGTTTTCACAAAGATCTGCAT 6183979 >seq39 Length=8077485 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||| | ||| | || | || ||||| || || || || || ||||| || | Sbjct 4823376 CCACCTCTCAGACGCAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 4823435 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | |||| |||| ||||| || ||||| |||| | ||| || || || || Sbjct 4823436 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGTGGG 4823495 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||||||||| || || || || || ||| | || | ||||||| | || || Sbjct 4823496 ATGCCTTCTTTGTCCTGGATCTTAGCCTTGACATTCTCAATAGTGTCACTGGGCTCAACC 4823555 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || |||| || ||||| || | || || ||||| ||||||||| Sbjct 4823556 TCTAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 4823603 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || || | ||| || || | || || || || || || || || ||||| || | Sbjct 4823148 CCACCCCTCAGACGCAACACAAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCAGAT 4823207 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | |||| |||| ||||| || ||||| |||| | ||| || || || || Sbjct 4823208 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGTGGG 4823267 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||||||||| || || || || || ||| | || | ||||||| | || || Sbjct 4823268 ATGCCTTCTTTGTCCTGGATCTTAGCCTTGACATTCTCAATAGTGTCACTGGGCTCAACC 4823327 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || |||| || ||||| || | || || ||||| |||||||| Sbjct 4823328 TCTAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 4823374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395898814208415