Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03- 31] 78,595 sequences; 2,365,766,571 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq78562 156 8e-33 seq7519 152 1e-31 seq136 127 4e-24 seq140 100 5e-16 seq135 93.3 8e-14 >seq78562 Length=1900200 Score = 156 bits (172), Expect = 8e-33 Identities = 163/214 (76%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 241414 CAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAG 241473 || ||| | ||| ||||||||||||||||| || | || ||| || || |||||||| Sbjct 960104 CATGACTTTCTGCTTGAGTTGGGCCACCTGATCTCTCAAGACGCTAGCCGTGTTGGACAG 960045 Query 241474 TCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAG 241533 ||| ||||| || | ||| ||| ||| ||||| ||||||||||| || || | |||||| Sbjct 960044 TCCCGCGTTCTCCGTCTTCAGCGTCTTGACTTTGTCCTCCAGCCGGGCTATCCTTTCCAG 959985 Query 241534 TTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTT 241593 || | | ||||| ||||| || ||||| ||||||| || | ||| | |||| |||| Sbjct 959984 CTTCCTCTTCCGGCACTTGGTAGCCGCCAACCGGTTCCTCAGCCGCTTCCTTTCCACCTT 959925 Query 241594 GATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 ||| | ||||| || ||||||| ||| |||||| Sbjct 959924 GATCCTCTCCTGATCTTCCATGTTGATGGGAGAC 959891 >seq7519 Length=821 Score = 152 bits (168), Expect = 1e-31 Identities = 168/222 (76%), Gaps = 4/222 (2%) Strand=Plus/Plus Query 241408 GTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATT 241467 ||| | ||| |||| ||| ||||| || |||||||| |||||||| | | ||||| Sbjct 91 GTGGCTCAGCACCTTCTGCTTGAGCTGCGCCACCTGCTCCCGCAGCAGGCTGGCGGTGGA 150 Query 241468 GGACAGTCCTGCGTTGTCAGACTT--GAGCACCTTCACTTTCTCCTCCAGCCGCGCGATG 241525 || ||| || ||| || | ||| ||| |||||| |||||||||||||||| |||| Sbjct 151 GGCCAG--CTCCGTGTTCTGGCTTTTGAGACTCTTCACCTTCTCCTCCAGCCGCGAGATG 208 Query 241526 CGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGT 241585 || ||||| || | | |||||| |||| ||| || | ||||||||| || | ||| || Sbjct 209 CGCTCCAGCTTCCTCTTGCGGCACTTGGAGGCGGCGATGCGGTTCCGCAGCCGCTTGCGC 268 Query 241586 TCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 |||||||||||||| ||||| ||||||||||| || ||| Sbjct 269 TCCGCCTTGATGCGCTCCTGCGTGTCCATGTCGATGGGCGAC 310 >seq136 Length=3052694 Score = 127 bits (140), Expect = 4e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 241430 AGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGAC 241489 || |||| |||||| ||||||| | | ||||| || ||| | ||||| | | Sbjct 1802665 AGCTGGGTGACCTGGGCCCGCAGCAGGCTGGCGGTGGCGGCCAGCTCCGCGTTCTGCCCC 1802724 Query 241490 TTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCAT 241549 || ||| ||||||| |||||||||||||||||||| || ||||| || ||||| ||||| Sbjct 1802725 TTCAGCGCCTTCACCTTCTCCTCCAGCCGCGCGATCCGCTCCAGCTTCCGCCGCCGGCAC 1802784 Query 241550 TTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCC 241609 |||| ||| || | ||||||||| || | ||| || || ||||| | || |||||| | Sbjct 1802785 TTGGAGGCCGCGATGCGGTTCCGCAGCCGCTTCCGCTCGGCCTTCAGCCGCTCCTGGCTC 1802844 Query 241610 TCCATGTCGATCGGAGAC 241627 ||| ||| | ||| ||| Sbjct 1802845 TCCGCGTCCAGCGGCGAC 1802862 >seq140 Length=3053534 Score = 100 bits (110), Expect = 5e-16 Identities = 124/165 (75%), Gaps = 6/165 (4%) Strand=Plus/Plus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 |||||||||| || || ||||||||||||||||| |||||| ||||||||||| ||| Sbjct 15623 GTGTACTCCACTATTTCTGTGCACAGGTTGCTGCACTTGATGGTTCCCAGGTTCTGCTGG 15682 Query 213588 TTTGACTTTGC-GTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTG 213646 ||| ||| | || ||| |||||||| |||||||| || | ||||||||| ||| Sbjct 15683 -TTGCTTTTCCTATTACAAGAGTCCTTGTACAGCATGTAAGGTGTCCCGGTCTCGGTCTG 15741 Query 213647 GGACACCAGTATCTGGC--TCCAGAGGTACCTGGCCTTGACCACC 213689 ||| | | | |||| |||||| | | |||||| |||||| Sbjct 15742 AGACTCTATGA--TGGCATACCAGAGCTGCTGGGCCTTCACCACC 15784 Score = 89.7 bits (98), Expect = 1e-12 Identities = 140/197 (71%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 213140 GCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTC 213199 ||||||||| || |||| ||| | ||||| ||| ||||||||||| ||||| || || Sbjct 12773 GCCTTTGCTGACAGGGCAGCCTTCGTAAGTTTCGTATGGGCCATGCTCTTTGGCGAGTTC 12832 Query 213200 GCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTT 213259 ||| | | || ||| |||| || ||||| || || |||| | ||| | | || Sbjct 12833 ACAGCTGGATTCCAAAGCACCGTAATAAATGGTCTCGAAGATCTGCTGGTTCAACAACTG 12892 Query 213260 GGCCTCTGGGGACGTGAA--GGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGG 213317 |||||| |||| | || ||| ||| |||| | |||| |||| ||||| || || Sbjct 12893 GGCCTC-GGGGCTTTCAAAGGGGTATC-TCATCAGGATGAACGCATCCGCCAGACCTTGC 12950 Query 213318 ACCCCGATGCCGATGGG 213334 || || ||||||||||| Sbjct 12951 ACTCCAATGCCGATGGG 12967 Score = 87.8 bits (96), Expect = 3e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 213821 CATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCAC 213880 |||||| || || || | ||| || || ||| |||||||||| | | ||| ||| Sbjct 17342 CATGAAGAGATCGGGAATCCAGAGGGCAAAGAAGAGGTCCCTGGCTCGCTGCTCCTCCTT 17401 Query 213881 TCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTA 213940 || | ||| || ||| || ||||| ||||| |||||| |||||| ||||| | ||| Sbjct 17402 CCCGGTGTTCTTCTTCAGGTCAAGAAACTCAAAAATGTCCAAGTGCCAAGGCTCAAGGTA 17461 Query 213941 GATGGCAAAGGCGCCCGGCCTCT 213963 |||||||||||| || || |||| Sbjct 17462 GATGGCAAAGGCCCCGGGTCTCT 17484 >seq135 Length=2957239 Score = 93.3 bits (102), Expect = 8e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 48155 TCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTG 48214 || || ||||| |||||| | |||||||| || |||||||| | ||||||| || Sbjct 2809034 TCATCTCGGCTAATGAGCTCATTGGAGAATGTCAGTCCAGGCATCAGACCCCTCTTCTTC 2808975 Query 48215 AGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGC 48273 ||||| ||||| || || ||||| || ||||||||||| || |||||||| || || || Sbjct 2808974 AGCCAAAAAATAGCAGCAAAAGAACCTGAGAAGAAGATCCCTTCCACTGCGGCAAAGGC 2808916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 930617627244800