Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03- 31] 78,595 sequences; 2,365,766,571 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq78578 134 9e-26 seq67 91.5 1e-12 seq2 91.5 1e-12 >seq78578 Length=5143557 Score = 134 bits (148), Expect = 9e-26 Identities = 235/337 (70%), Gaps = 4/337 (1%) Strand=Plus/Minus Query 475487 CGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACT 475546 ||||| | ||||||||||||||||| ||||| | || || ||| ||||| | | | Sbjct 2804844 CGTCTCCGCACTGCTTGTGAACGTGCAAAGCGTACCCTCTCCTCTAGCACTCAGGCCAGT 2804785 Query 475547 GTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAA 475606 |||| |||| ||||| | ||| || ||||||| | | || ||||| || ||| Sbjct 2804784 ATTGAGATTGACTCTCTCTATGAGGGCATTGATTTTTACACCTCAATTACCAGAGCTCGT 2804725 Query 475607 TTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTC 475666 |||||||| | | ||||||| || | || | || ||||| || | | || Sbjct 2804724 TTTGAAGAGTTAAATGCTGATCTGTTCCGTGGCACTCTGGATCCCGTGGAGAAGGCCCTG 2804665 Query 475667 AGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACA 475726 | ||| | ||||| ||||||||||| ||||||| ||||| || || || || || || Sbjct 2804664 CGGGATGCCAAACTAGACAAATCACAGATCCATGATATTGTACTGGTTGGTGGGTCTACC 2804605 Query 475727 AGAAT-TCCAAAAATAAGAGAAATGCTTTCATCATAT-TTTAATGGTAAAAAGTTAAATG 475784 |||| |||| | | ||| || ||| | || || | || ||||| ||| || | ||| Sbjct 2804604 CGAATCCCCAAGATTCAGA-AACTGC-TGCAGGATTTCTTCAATGGCAAAGAGCTGAATA 2804547 Query 475785 AAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGC 475821 | || | ||||||||||||||||| || ||||| || Sbjct 2804546 AGAGCATCAATCCTGATGAAGCTGTGGCTTATGGTGC 2804510 Score = 107 bits (118), Expect = 1e-17 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 474728 GTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACT 474787 || ||| |||| || | || || ||||| || || ||||| || || || || || || Sbjct 2805327 GTTACTAATGCTGTGGTCACAGTACCAGCCTACTTCAATGACTCCCAGCGCCAGGCCACA 2805268 Query 474788 AAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCA 474847 |||||||| |||| ||||||||||| ||||| | || || || |||||||| ||||| Sbjct 2805267 AAAGATGCTGGAACCATTGCAGGTCTCAATGTGCTCCGGATCATCAATGAACCGACAGCT 2805208 Query 474848 GCCGCACTTGCTTATGGTCTTGATAAGAA 474876 || || ||||||||||| | || ||||| Sbjct 2805207 GCTGCTATTGCTTATGGTTTGGACAAGAA 2805179 >seq67 Length=5437995 Score = 91.5 bits (100), Expect = 1e-12 Identities = 120/161 (75%), Gaps = 4/161 (2%) Strand=Plus/Minus Query 627729 ATCTCTAAAATTATA-AAATGCATAACAATAAGATTTATCACCATCACGTCCTGCTCTAC 627787 ||| ||| || | || ||| ||| |||| | ||| |||||||| ||||| ||||| | Sbjct 1516493 ATCACTATAACTGTAGAAAAGCA-AACAGTGAGAAACTTCACCATCTCGTCCAGCTCTGC 1516435 Query 627788 CTATTTCTTGATAATAACCTTCGATATTTTTAGGTGCGCCAT-AATGTATTACTGCTCTC 627846 | |||||||||||||||||| ||| |||||| | | || ||| || || | Sbjct 1516434 CAGATTCTTGATAATAACCTTCCATAGATTTAGG-GAGAGATGCATGAATAACGTAGCGT 1516376 Query 627847 ACATCTGATTTATTAATACCCATTCCAAATGCAATTGTTGC 627887 ||||||| ||||| ||| ||||| ||||| ||||||||||| Sbjct 1516375 ACATCTGGTTTATCAATTCCCATGCCAAAAGCAATTGTTGC 1516335 >seq2 Length=68452538 Score = 91.5 bits (100), Expect = 1e-12 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 480637 CAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGA 480696 || ||||||| | ||| ||||||||||||||||||||||| || || ||||| || | Sbjct 8820693 CATAAATAAGTCATTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTCA 8820634 Query 480697 CAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCT 480756 || ||| |||||||||| | | |||||||| || ||||| ||||| || |||| Sbjct 8820633 CATTTTCTATAGTATCAGAAGGCTCAACCTCAAGGGTGATGGTTTTCCCGGTCAGGGTCT 8820574 Query 480757 TAACG 480761 | ||| Sbjct 8820573 TCACG 8820569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3264807879107060