Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chrysemys_20picta_20bellii_20[refseq_20GCF_5F000241765.3_202014-03-
31] 78,595 sequences; 2,365,766,571 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq78578 134 9e-26
seq67 91.5 1e-12
seq2 91.5 1e-12
>seq78578
Length=5143557
Score = 134 bits (148), Expect = 9e-26
Identities = 235/337 (70%), Gaps = 4/337 (1%)
Strand=Plus/Minus
Query 475487 CGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACT 475546
||||| | ||||||||||||||||| ||||| | || || ||| ||||| | | |
Sbjct 2804844 CGTCTCCGCACTGCTTGTGAACGTGCAAAGCGTACCCTCTCCTCTAGCACTCAGGCCAGT 2804785
Query 475547 GTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAA 475606
|||| |||| ||||| | ||| || ||||||| | | || ||||| || |||
Sbjct 2804784 ATTGAGATTGACTCTCTCTATGAGGGCATTGATTTTTACACCTCAATTACCAGAGCTCGT 2804725
Query 475607 TTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTC 475666
|||||||| | | ||||||| || | || | || ||||| || | | ||
Sbjct 2804724 TTTGAAGAGTTAAATGCTGATCTGTTCCGTGGCACTCTGGATCCCGTGGAGAAGGCCCTG 2804665
Query 475667 AGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACA 475726
| ||| | ||||| ||||||||||| ||||||| ||||| || || || || || ||
Sbjct 2804664 CGGGATGCCAAACTAGACAAATCACAGATCCATGATATTGTACTGGTTGGTGGGTCTACC 2804605
Query 475727 AGAAT-TCCAAAAATAAGAGAAATGCTTTCATCATAT-TTTAATGGTAAAAAGTTAAATG 475784
|||| |||| | | ||| || ||| | || || | || ||||| ||| || | |||
Sbjct 2804604 CGAATCCCCAAGATTCAGA-AACTGC-TGCAGGATTTCTTCAATGGCAAAGAGCTGAATA 2804547
Query 475785 AAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGC 475821
| || | ||||||||||||||||| || ||||| ||
Sbjct 2804546 AGAGCATCAATCCTGATGAAGCTGTGGCTTATGGTGC 2804510
Score = 107 bits (118), Expect = 1e-17
Identities = 113/149 (76%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 474728 GTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACT 474787
|| ||| |||| || | || || ||||| || || ||||| || || || || || ||
Sbjct 2805327 GTTACTAATGCTGTGGTCACAGTACCAGCCTACTTCAATGACTCCCAGCGCCAGGCCACA 2805268
Query 474788 AAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCA 474847
|||||||| |||| ||||||||||| ||||| | || || || |||||||| |||||
Sbjct 2805267 AAAGATGCTGGAACCATTGCAGGTCTCAATGTGCTCCGGATCATCAATGAACCGACAGCT 2805208
Query 474848 GCCGCACTTGCTTATGGTCTTGATAAGAA 474876
|| || ||||||||||| | || |||||
Sbjct 2805207 GCTGCTATTGCTTATGGTTTGGACAAGAA 2805179
>seq67
Length=5437995
Score = 91.5 bits (100), Expect = 1e-12
Identities = 120/161 (75%), Gaps = 4/161 (2%)
Strand=Plus/Minus
Query 627729 ATCTCTAAAATTATA-AAATGCATAACAATAAGATTTATCACCATCACGTCCTGCTCTAC 627787
||| ||| || | || ||| ||| |||| | ||| |||||||| ||||| ||||| |
Sbjct 1516493 ATCACTATAACTGTAGAAAAGCA-AACAGTGAGAAACTTCACCATCTCGTCCAGCTCTGC 1516435
Query 627788 CTATTTCTTGATAATAACCTTCGATATTTTTAGGTGCGCCAT-AATGTATTACTGCTCTC 627846
| |||||||||||||||||| ||| |||||| | | || ||| || || |
Sbjct 1516434 CAGATTCTTGATAATAACCTTCCATAGATTTAGG-GAGAGATGCATGAATAACGTAGCGT 1516376
Query 627847 ACATCTGATTTATTAATACCCATTCCAAATGCAATTGTTGC 627887
||||||| ||||| ||| ||||| ||||| |||||||||||
Sbjct 1516375 ACATCTGGTTTATCAATTCCCATGCCAAAAGCAATTGTTGC 1516335
>seq2
Length=68452538
Score = 91.5 bits (100), Expect = 1e-12
Identities = 95/125 (76%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 480637 CAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGA 480696
|| ||||||| | ||| ||||||||||||||||||||||| || || ||||| || |
Sbjct 8820693 CATAAATAAGTCATTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTCA 8820634
Query 480697 CAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCT 480756
|| ||| |||||||||| | | |||||||| || ||||| ||||| || ||||
Sbjct 8820633 CATTTTCTATAGTATCAGAAGGCTCAACCTCAAGGGTGATGGTTTTCCCGGTCAGGGTCT 8820574
Query 480757 TAACG 480761
| |||
Sbjct 8820573 TCACG 8820569
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3264807879107060
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |